LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g1679	ATGGTGAATTCATCTCAGAACAACAACGGATTAATGCTGCACTCTGTGGTTTCTGATGAAGGTGAACAACAACCTCCACTCTCTCGTGCCAATGAACTCGCCATTTCCTTTGAAGGCGAAGTTTATGTTTTCCCTTCCATAACTCCTGAAAAGGTGCAGGCTGTATTGTTATTCTTAGGAGGGCAGGAGACACCGAATGCCGTCACCACCTCCGACTGTTTGGTGCAGCAAAAATGTCAGGACGTTTGGGGGATAAATGATCCTTCCCGTAGTTCAAAGCTTTCACGGAGAATTGAATCACTTGTTAGGTTCCGTGAAAAACGAAAAGAGAGATGCTTTGAGAAGAAAGTTCGGTACACTTGCCGTAAAGAGGTTGCTGAGAGGATGCAGCGGAAGAACGGACAGTTTGCATCATTGAAGGAAGAGTACTGTTCTCCTTCTGAAAACCAGGACTCTAGCAACGGTACACCTTGCTCAGAATCTACGGAGCGTAGATGCCAACATTGTGGAATTGGTGAGAAGTCTACTCCAGTGATGCGTCGAGGACCAGCTGGTCCAAGATCTCTATGCAATGCCTGCGGGCTCATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAGGGATTGCTCTAGAACAGAATGAACTGGATACTTCAACTGATATAAAGCCTTTAAAAACAGAGCCAGAAAATTCATGTCTTGCACAGGATAAGGAGGATACTTCAACTAATATAAAGCCTTTAAAAACAGAGCCAGAAAATTCATGTCCTGCCCAGGACAAGGAGGAAAGCCCCCAGGAAACAAAGCCTGTGCTAATGGATGCCAGACAGCCACATGAGATGATAAATGAGCAGTATATGCTCGAATCTGCTGAAGCGGTTACTCACAATCTGTCCATTCAAGTGGAGGATCTGCTTGATCAGGATAATACTATGGAGGATTTTGCCGATGCTTCTGGGACTGAATTTGAGATTCCTGCAGGTTTTGATGATCTGATTGATATCGAGGATTCTAACATGAGGACTTACTGGCTATGA	1047	0.4499	MVNSSQNNNGLMLHSVVSDEGEQQPPLSRANELAISFEGEVYVFPSITPEKVQAVLLFLGGQETPNAVTTSDCLVQQKCQDVWGINDPSRSSKLSRRIESLVRFREKRKERCFEKKVRYTCRKEVAERMQRKNGQFASLKEEYCSPSENQDSSNGTPCSESTERRCQHCGIGEKSTPVMRRGPAGPRSLCNACGLMWANKGTLRDLSKAGGIALEQNELDTSTDIKPLKTEPENSCLAQDKEDTSTNIKPLKTEPENSCPAQDKEESPQETKPVLMDARQPHEMINEQYMLESAEAVTHNLSIQVEDLLDQDNTMEDFADASGTEFEIPAGFDDLIDIEDSNMRTYWL*	349

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g1679	348	PANTHER	GATA TRANSCRIPTION FACTOR 28	242	339	IPR045280	GO:0006355
	Tpr3g1679	348	PANTHER	GATA TRANSCRIPTION FACTOR 28	16	243	IPR045280	GO:0006355
	Tpr3g1679	348	ProSiteProfiles	GATA-type zinc finger domain profile.	160	217	IPR000679	GO:0006355\|GO:0043565
	Tpr3g1679	348	ProSiteProfiles	CCT domain profile.	97	139	IPR010402	GO:0005515
	Tpr3g1679	348	Gene3D	-	158	218	IPR013088	GO:0006355\|GO:0008270
	Tpr3g1679	348	MobiDBLite	consensus disorder prediction	258	272	-	-
	Tpr3g1679	348	SMART	GATA_3	160	213	IPR000679	GO:0006355\|GO:0043565
	Tpr3g1679	348	Coils	Coil	122	142	-	-
	Tpr3g1679	348	ProSiteProfiles	Tify domain profile.	26	61	IPR010399	-
	Tpr3g1679	348	Pfam	CCT motif	97	138	IPR010402	GO:0005515
	Tpr3g1679	348	ProSitePatterns	GATA-type zinc finger domain.	166	193	IPR000679	GO:0006355\|GO:0043565
	Tpr3g1679	348	Pfam	tify domain	30	60	IPR010399	-
	Tpr3g1679	348	Pfam	GATA zinc finger	166	202	IPR000679	GO:0006355\|GO:0043565
	Tpr3g1679	348	PANTHER	GATA TRANSCRIPTION FACTOR 28 ISOFORM X1	242	339	-	-
	Tpr3g1679	348	PANTHER	GATA TRANSCRIPTION FACTOR 28 ISOFORM X1	16	243	-	-
	Tpr3g1679	348	CDD	ZnF_GATA	165	208	IPR000679	GO:0006355\|GO:0043565
	Tpr3g1679	348	MobiDBLite	consensus disorder prediction	223	273	-	-
	Tpr3g1679	348	SMART	tify_2	26	61	IPR010399	-
	Tpr3g1679	348	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	162	213	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g1679	Tpr-Chr3	14943380	14948781	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g1679	17	209	Tify Gene Family	AT1G51600	54.500	8.69e-63	200

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Tpr3g1679		CCT	2.7e-14	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g1679	-		-	mtr:MTR_4g093730	455.292