Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1666 ATGACTAGAAAGAAAATAGAGATAAAGAAAATCGATAACATAAGTTCGAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCAGACATTGCTCTTATGGTTTTTTCTGCAACTGGTAAGCTCTTTGAGTATGCTAGTACTTCAAGTATAGAACAAGTAATTGAAAGGCGTAATGGATATTCAGCAAATCATAGATTCATGGACCACCCATCTACTGATCAGCTTCAGGTTGAGAGTGACTCCAATTACAACACTTTGTGCAAGAAATTAGAAGATAAATCTCGTGAAGTGAGGCATTTGAATGGAGAAGATCTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGGCTATACTTCAAAGAAGTTTGTCCAGTGTTTCAAAAATAAAGGATGAAATGTTTATGCAAGACATCAACACCCTTAAGAGAAAGGAAGTGAAACTGATAGAAGAAAACCAAAGATTGAAATATGTGGTACCAGACCTTATAAGTGGACATATGCAACAATCATTGGAATCTGTTATTAGCGGATCATCATCTTATTTTGATGACAGTGACACATCTCTCAACTTGGGGTTACAATTACTTAAATAA 636 0.3616 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSATGKLFEYASTSSIEQVIERRNGYSANHRFMDHPSTDQLQVESDSNYNTLCKKLEDKSREVRHLNGEDLQELTVQELQKLEAILQRSLSSVSKIKDEMFMQDINTLKRKEVKLIEENQRLKYVVPDLISGHMQQSLESVISGSSSYFDDSDTSLNLGLQLLK* 212
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1666 211 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Tpr3g1666 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1666 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1666 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1666 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1666 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g1666 211 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g1666 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1666 211 PANTHER - 1 205 - -
Tpr3g1666 211 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g1666 211 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Tpr3g1666 211 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 205 - -
Tpr3g1666 211 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Tpr3g1666 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr3g1666 Tpr-Chr3 14857598 14865808 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1666 1 207 MADS-box Gene Family AT4G24540 48.402 1.81e-57 179
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr3g1666 K-box 8.5e-17 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1666 - - aprc:113860188 257.684
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1666 3 14857598 14865808 Tpr3g1666 3 14857598 14865808 ECH