Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1657 ATGGGGTTTCATCACAGAAAACTAGTATCATCTATCCCTGGCTGTGAATCTTACTGTCATGAGGAATGTTCCACCATAGACTGTGATTTTTGCATCGGAAAATGCTTAGGCTATAACCTTCAACCACCACCACCACCACCTCAAGATCACAACAAAAACAAAACATCTACTTACTTGATCATAAGTTTTTCTATTGTAGCTGCTCTTTTCCTTGTTTTATGCTGCTATGCTTTCTATGTCAAGTTTTTCTCTCATAGGAACAGGTCAAGAAGAACAACCTTATTAACAAGACAACAAACAGAACATGGTTTTGTTGTTGATGAAGAACATGATGATGGTTCTGTTGTGGATCACCCAATATGGTATATTCGTACTCTTGGTCTTCATGAATCAATTATTAATGCAATCACTGTTGTTAAATATAAGAAAGATGAATTCTTGATTGATGGGTCAGATTGTTCTGTTTGTTTGAGTGAGTTTGAAGAAGATGAAAATCTTAGACTTTTGCCTAAGTGTAATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCACACACTAATTGTCCTATGTGTAGAGCTCCTATTGTTGTTGATCCTTTAAGAATTCCATCTATGGATCCTAATCTTTTTGTGGAAAGTTCTCATATGGAAAATGGAAATGGAGTGGAAGATAGCGTTGTTAATCAGTTGAGAAACGGTGAAGAAGAAGAAGAAGAAGAAGAGGAAGATGTTGAGGAAGATGAGAGTTCAGGTTTAGAGATGGTAAATATGCAGCAGCCAAGAAGATCAGTTTCTCTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTATCCAATTTTCTATCAGTGGAATCTCAAGGGAATTCTAATCCTAATAGGGAACATGTAGGGGAAGTCAATGAACAAGTTGCTTCAAAGAGGGTTGGTGGAAATGGAAATATGGTAAATGTGCATAGTGCTCCTTGTTCAATGAAGAGGTCAAGATCCTTCAATGGAAAACATCTACTATCATTGTATAGCAGCAGTCAGAAGAAGATAAATCCTCCAGTGAGAAGCTTTTGA 1074 0.3678 MGFHHRKLVSSIPGCESYCHEECSTIDCDFCIGKCLGYNLQPPPPPPQDHNKNKTSTYLIISFSIVAALFLVLCCYAFYVKFFSHRNRSRRTTLLTRQQTEHGFVVDEEHDDGSVVDHPIWYIRTLGLHESIINAITVVKYKKDEFLIDGSDCSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVVDPLRIPSMDPNLFVESSHMENGNGVEDSVVNQLRNGEEEEEEEEEDVEEDESSGLEMVNMQQPRRSVSLDSSSAAKINLALSNFLSVESQGNSNPNREHVGEVNEQVASKRVGGNGNMVNVHSAPCSMKRSRSFNGKHLLSLYSSSQKKINPPVRSF* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1657 357 Pfam Ring finger domain 152 195 IPR001841 -
Tpr3g1657 357 CDD RING-H2_PA-TM-RING 152 195 - -
Tpr3g1657 357 SUPERFAMILY RING/U-box 141 201 - -
Tpr3g1657 357 MobiDBLite consensus disorder prediction 232 269 - -
Tpr3g1657 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 201 IPR013083 -
Tpr3g1657 357 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Tpr3g1657 357 Coils Coil 230 253 - -
Tpr3g1657 357 SMART ring_2 153 194 IPR001841 -
Tpr3g1657 357 MobiDBLite consensus disorder prediction 236 253 - -
Tpr3g1657 357 PANTHER RING-H2 FINGER PROTEIN ATL54 15 345 - -
Tpr3g1657 357 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 15 345 IPR044675 -
Tpr3g1657 357 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1657 Tpr-Chr3 14791967 14794244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1657 46 319 C3H Transcription Factor Family AT1G72220 36.364 7.91e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1657 - - mtr:MTR_4g093830 514.998