Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1631 ATGAAAGTAATTGGAGCACATGTTGGTGGTGGTGATCATATAAAGACCACTAACCACTCTTCAATTGGTCCTCCTTTGACTGCCATTGATAGATTCTTATGGGGTCAACAAAACCATTTCCCTCAAAAGAAACTTCAACAAAATGTTGATGATCAAAATATGTGTAGCTTTGGTTGTTCTAATGTTTCAACATATAGTTCTATGTGGCCTAATAATAATATGATCTTGACTCAAGAAGCTAGCTTTGTTGATCATCTTTTGGCAAATGAAGAGGTGATGAATTGGACACACCAAATTCCTTCATTGTGTGTGGAGAAAGAAGATGTGATCAATGATTTAGGCAAGGGTACAAAAATGGTTGGAAAAAGACCTAAGAAAGTGTCTTCTTTTTCTTTGATCAAAGGACAATGGACGAATGAAGAAGACAGTAAATTGTTGAAGTTGGTGAAGCAATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTCGAGAGAGGTGGTATAATCATCTAAGGCCTGATATTAAAAAAGATAGTTGGAGCGAAGAAGAAGAGAGGATACTAGTAGAAAGCCATGGCAAGATTGGAAACCGCTGGGCGGAGATAGCAAAGAAAATTCCTGGAAGAACAGAGAATGCAATTAAGAATCATTGGAATGCAACTAAAAGGAGACAAAATTCAAGGAGAAAGAACAAAAAGCCTAAAACTACAAATGCTAAACCACAATCTTCTATTCTCCAAGACTATATCAAAACTTTGACTCAAAAATCGTCCACCACTACTACCACCACCACCACCACTACTACTACCGCGTCTAGCTCCACGTCAGCATTAATCTCTGAGGACCCTTCTTCAAACCAATCCGACCTTGTTTTTTCGAACATGTCTCATGAAAATTCATCATCACCACTTATAGTTGAATCTTATGATGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAATAATTCTGAACCTGGTAACCCCTACTACAAGAAACCCTCTTTAAACTCTTATTCATTGGATTATTCTTCCCAAACTAATAGTAATCAGATTCTCTGTGATGTTACTGATTGTGGATTTGTTCATTCCAATTCTAATTACCCTATGATGAATTTTGATCACTGCTACCTTTCACCAATGTTGAATGGAAATCATCAAAACCAAAGTAATGTGGAGTGGCAACTTGGGAATATGAATTTTTAG 1239 0.3705 MKVIGAHVGGGDHIKTTNHSSIGPPLTAIDRFLWGQQNHFPQKKLQQNVDDQNMCSFGCSNVSTYSSMWPNNNMILTQEASFVDHLLANEEVMNWTHQIPSLCVEKEDVINDLGKGTKMVGKRPKKVSSFSLIKGQWTNEEDSKLLKLVKQYGVRKWSQIAEKLEGRAGKQCRERWYNHLRPDIKKDSWSEEEERILVESHGKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKPKTTNAKPQSSILQDYIKTLTQKSSTTTTTTTTTTTTASSSTSALISEDPSSNQSDLVFSNMSHENSSSPLIVESYDDELLFMQQLFKVNNNSEPGNPYYKKPSLNSYSLDYSSQTNSNQILCDVTDCGFVHSNSNYPMMNFDHCYLSPMLNGNHQNQSNVEWQLGNMNF* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1631 412 SUPERFAMILY Homeodomain-like 131 227 IPR009057 -
Tpr3g1631 412 ProSiteProfiles Myb-like domain profile. 181 231 IPR001005 -
Tpr3g1631 412 Gene3D - 187 260 - -
Tpr3g1631 412 SMART sant 133 182 IPR001005 -
Tpr3g1631 412 SMART sant 185 233 IPR001005 -
Tpr3g1631 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 184 IPR017930 -
Tpr3g1631 412 Gene3D - 133 185 - -
Tpr3g1631 412 MobiDBLite consensus disorder prediction 217 296 - -
Tpr3g1631 412 Pfam Myb-like DNA-binding domain 137 194 - -
Tpr3g1631 412 MobiDBLite consensus disorder prediction 246 296 - -
Tpr3g1631 412 CDD SANT 188 231 IPR001005 -
Tpr3g1631 412 PANTHER MYB DOMAIN PROTEIN 64-RELATED 126 338 - -
Tpr3g1631 412 MobiDBLite consensus disorder prediction 230 245 - -
Tpr3g1631 412 ProSiteProfiles Myb-like domain profile. 134 180 IPR001005 -
Tpr3g1631 412 PANTHER MYB PROTEIN-RELATED 126 338 - -
Tpr3g1631 412 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 235 IPR017930 -
Tpr3g1631 412 CDD SANT 137 180 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1631 Tpr-Chr3 14513922 14516497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1631 23 329 MYB Transcription Factor Family AT5G58850 45.714 1.20e-76 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr3g1631 Myb_DNA-bind_6 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1631 K09422 - gmx:100786295 371.318