Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1608 ATGGAAAACGCGATGAGCAACGTCAAGAAGAAGGTTTCGAAGATGAGGACTTTGAACGAGAATGTTCCACCGATGCAGATCGAGTTGGATGATATGAGAGGACGATATCTCCAATCAAAGACGATGAGTCCAGGTTTTCAATCGTACGCCGAGAACATCGACTTCGGTTCGCCGCCGCCGCTCGCACGATACTTCTACGCCGGTTCTCCACTTTCCGGTAAATCCAGTAACTCCTTCAATTCTCCAATTTTCGGCGCGAGCAAGTATAGGTCTCTAAAAATGCAGCAGTACTCCGGCGGCGGCACTAGTTCAGGGAACAGTAGCTTCGGTTCTCGCGGTAGATTACCTCTCTCGCCGCTTTCTTCAATTGAGAATTTTGAGAAAAAGTCACCGCCGATCTACAGAACGCCGGTGAAAGGTGACGAGGAAGTTTTTGTGATGGATGATATTCAGGTGAGGCCAATGTCCGGAGGAAAGAGCGGAAGATCTTCATCATCATCTTCTTCCGGTAGAGGTTCTTCTTCGTCGTCGACGAAGAGTTTGTTTAAGACTGATATTTGCAGAGCGTGGGAAGATTCTGGAAACTGTCGCTATAACTCCAAATGCCAGTTTGCCCACGGAAGAGAGGAGCTTCATCCAAGTCGTCTCAGCATGAAGCGTAAATCTGAGATGGGAAGACAATCTGCTAGACAAGGATCCTGGTCATTTAGCCCAAATAGCGACCCTGTTCACAAACCTGCTGAAGTAGCTGAAGCTGAACATGCAGTCAGAAGACTCCCAATTTCACAACCAACTTCACCTGAACCTCATTGTTCCCCTGCCAGTTCCAACACCATCAGTGATTGGTCACCACTGGATGATGGCATTGAAGTTGTCCTCCCAAATGGTTCAGGTAGAGATCCCTCTAGGGAGGAAGTTGAAGCATACATTTTGGGCACTCTCAATCAGCGGACTACTAAATGGAGACTACCAGTTTTTGATGCAATTTGCAAGGTGCAGTAA 1002 0.476 MENAMSNVKKKVSKMRTLNENVPPMQIELDDMRGRYLQSKTMSPGFQSYAENIDFGSPPPLARYFYAGSPLSGKSSNSFNSPIFGASKYRSLKMQQYSGGGTSSGNSSFGSRGRLPLSPLSSIENFEKKSPPIYRTPVKGDEEVFVMDDIQVRPMSGGKSGRSSSSSSSGRGSSSSSTKSLFKTDICRAWEDSGNCRYNSKCQFAHGREELHPSRLSMKRKSEMGRQSARQGSWSFSPNSDPVHKPAEVAEAEHAVRRLPISQPTSPEPHCSPASSNTISDWSPLDDGIEVVLPNGSGRDPSREEVEAYILGTLNQRTTKWRLPVFDAICKVQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1608 333 SMART c3hfinal6 181 208 IPR000571 GO:0046872
Tpr3g1608 333 Coils Coil 1 21 - -
Tpr3g1608 333 MobiDBLite consensus disorder prediction 152 178 - -
Tpr3g1608 333 ProSiteProfiles Zinc finger C3H1-type profile. 181 209 IPR000571 GO:0046872
Tpr3g1608 333 Gene3D - 173 214 - -
Tpr3g1608 333 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 208 IPR000571 GO:0046872
Tpr3g1608 333 MobiDBLite consensus disorder prediction 213 242 - -
Tpr3g1608 333 MobiDBLite consensus disorder prediction 157 178 - -
Tpr3g1608 333 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 329 IPR045877 GO:0003729
Tpr3g1608 333 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN 6 329 - -
Tpr3g1608 333 SUPERFAMILY CCCH zinc finger 180 212 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1608 179 226 C3H Transcription Factor Family AT1G68200 39.583 1.16e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr3g1608 zf-CCCH 9.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1608 - K18753 gmx:102665928 268.47