Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1601 ATGGAAGAGGCAAATAAGAAGGGAGATGAAGAAGTTAGGTACCGTGGTGTTAGAAGAAGGCCATGGGGAAAATTTGGGGCTGAGATTAGGGATCCAACAAAACCTACTGGAAGACAATGGTTAGGAACATTCGACTCAGCTGAGGAAGCTGCGAGAGCTTATGATTGTGCTGCCATTCGTTTGCGGGGTGCTCTTGCCATTCTTAATTTTCCTGATGAATATTATTTTCATCTTTCTTCTTTATTGTCGTCGTCATCGTCATCTACTTGTGCCATTGCAAGCACTTCGTCTACACAACATAAGGAAGTTATTGAGTTTGAGTATTTGGATAATAAGGTGTTGGAAGATCTTCTTGCGTCATCGAAAGAAGAGAATGAAAAGAAGAATTATTAA 393 0.4046 MEEANKKGDEEVRYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDSAEEAARAYDCAAIRLRGALAILNFPDEYYFHLSSLLSSSSSSTCAIASTSSTQHKEVIEFEYLDNKVLEDLLASSKEENEKKNY* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1601 130 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Tpr3g1601 130 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Tpr3g1601 130 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Tpr3g1601 130 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Tpr3g1601 130 PANTHER DNA-BINDING DOMAIN 1 123 IPR044808 GO:0003700|GO:0009873
Tpr3g1601 130 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Tpr3g1601 130 PANTHER ETHYLENE RESPONSE FACTOR 1 123 - -
Tpr3g1601 130 SUPERFAMILY DNA-binding domain 13 73 IPR016177 GO:0003677
Tpr3g1601 130 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Tpr3g1601 130 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1601 Tpr-Chr3 14255253 14255645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1601 9 120 AP2-EREBP Transcription Factor Family AT3G23230 59.167 1.73e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g1601 AP2 2.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1601 - - gmx:100807295 157.918