Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1597 ATGCAGTTTAAAATGTCAGATGAGGATGAATATCGCTGTTTTGTTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAATTTGGCAAGCTTACTGAGGCCAAGGTGGTTGTTGATAAATTCTCTGGACGCTCTCGCGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATAGATTTAGATGGGCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAAATAGAGATGATGGTGATCGCTACCGAGAACGTGGTCGTGATCGTGACCGTGATCGAGATTATCGAGGTGGAGGTGGTCGAGGATCTATTGATGGAGGATGCTTTAATTGTGGTAAGCCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGGAGAGGGGGAAGGTATGGTGGCCGAGAAAGTAGATATGGTGGAAGCGGTGGTGGTGGTGGTCACTATGGTCCAGATAGAAATGGAGATCGTTCTTCTGGCGGTCGCAGCAGGGATGGTGGTAGTCGTGGAGATTCTGGAAGTGATCGATACTATCGTGATCGTGACCGTGCTGGACCGTATGAACGAGAACGACGTGGATCTGGAGGCTATCGCTGA 651 0.4654 MQFKMSDEDEYRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGIDLDGRTITVDKAQPQQGSNRDDGDRYRERGRDRDRDRDYRGGGGRGSIDGGCFNCGKPGHFARECPSEGGRGGRYGGRESRYGGSGGGGGHYGPDRNGDRSSGGRSRDGGSRGDSGSDRYYRDRDRAGPYERERRGSGGYR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1597 216 MobiDBLite consensus disorder prediction 86 118 - -
Tpr3g1597 216 Gene3D - 2 121 IPR012677 -
Tpr3g1597 216 SMART rrm1_1 12 85 IPR000504 GO:0003723
Tpr3g1597 216 MobiDBLite consensus disorder prediction 92 118 - -
Tpr3g1597 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Tpr3g1597 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 89 IPR000504 GO:0003723
Tpr3g1597 216 Pfam Zinc knuckle 126 142 IPR001878 GO:0003676|GO:0008270
Tpr3g1597 216 SUPERFAMILY RNA-binding domain, RBD 4 121 IPR035979 GO:0003676
Tpr3g1597 216 MobiDBLite consensus disorder prediction 157 216 - -
Tpr3g1597 216 ProSiteProfiles Zinc finger CCHC-type profile. 127 142 IPR001878 GO:0003676|GO:0008270
Tpr3g1597 216 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 5 175 - -
Tpr3g1597 216 PANTHER TRANSFORMER-2-RELATED 5 175 - -
Tpr3g1597 216 Gene3D - 122 150 - -
Tpr3g1597 216 SUPERFAMILY Retrovirus zinc finger-like domains 109 147 IPR036875 GO:0003676|GO:0008270
Tpr3g1597 216 MobiDBLite consensus disorder prediction 173 216 - -
Tpr3g1597 216 SMART c2hcfinal6 126 142 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1597 Tpr-Chr3 14228955 14231754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1597 13 88 Eukaryotic Initiation Factors Gene Family AT4G34110 35.526 1.13e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1597 - - gmx:100815224 211.46