Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1561 ATGGTGAAATTCTCGGTTGGTGGTTCCGACGACGGTGAAGGACCTAGCAACCCAAACCAGAAGCGCCGAAGGGTTGACGACGGAGAACAACCAGCACCAACAACCACAGAAGAAGAAGAAGAAAACGAACAATCATCACAAGAAGGGTTCGAAATGGTAAATATCCCAATTCGAAACCTAGAAAACGACGCAAATGAAGGAACCTCCAATGGATCCAACTCAGGACAAGCTAATGATATGGGTAAGAGCGTTTCTGCAGTTATTTCTGACCCTGATGTTCTTGATTGCTTCATTTGCTCTGAACCATTGTCAATTCCTATATATCAGTGTGAGAATGGCCATATTGCTTGCTCTAAGTGTTGTGGCGAACTTATGAACAAATGTCCCATGTGCTTAATGCCCATTGGGTACAATCGTTGCCGGGCTGTGGAGAAGTTGTTGGAATCTATTAAAATATCATGCCCAAATGCAAATTATGGCTGTAAAGAAATGCTTAGTTGCAATATGAAAGGCAGCCACGAGAAGGAATGCATATATACACCATGTAAATGTCCACACAAAGGTTGCGGCTTTCTTGCCTCATCCAAGGAGTTAGCACTTCACTTCAGCCATAGGCATGTAGGTTTTGGAGTACAGTTTACATATGGCAAATACATATCTGTCTCCTTAAATACTCGTCAGAAAGAAATTGTTCTTATAGATCAAAATGATGCAACACTATTTATTGTTCACAATATTTACCTTCAGAAATTGGGAAATATGGTCCATATTAGTTGTCTTGGTCCCAAAGCAATGGCGGGTTTTCATTATGTTGTCAAGGCTATGACTGATGCAACCACATTGAAACTGAAAACTCCTGTGAATATCATTCAAGACAATAATGGTAGTGCTCCTACAACTGGATTTCTTATGATTACTCCAGATCATCTTAACTTTGGACAACTCAAATTGGATATTCGTATAAAGTCTCACCAAACCGTTGTTTAA 987 0.4022 MVKFSVGGSDDGEGPSNPNQKRRRVDDGEQPAPTTTEEEEENEQSSQEGFEMVNIPIRNLENDANEGTSNGSNSGQANDMGKSVSAVISDPDVLDCFICSEPLSIPIYQCENGHIACSKCCGELMNKCPMCLMPIGYNRCRAVEKLLESIKISCPNANYGCKEMLSCNMKGSHEKECIYTPCKCPHKGCGFLASSKELALHFSHRHVGFGVQFTYGKYISVSLNTRQKEIVLIDQNDATLFIVHNIYLQKLGNMVHISCLGPKAMAGFHYVVKAMTDATTLKLKTPVNIIQDNNGSAPTTGFLMITPDHLNFGQLKLDIRIKSHQTVV* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1561 328 MobiDBLite consensus disorder prediction 16 31 - -
Tpr3g1561 328 ProSiteProfiles Zinc finger SIAH-type profile. 149 207 IPR013010 GO:0008270
Tpr3g1561 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 21 327 - -
Tpr3g1561 328 Pfam Seven in absentia protein family 139 296 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tpr3g1561 328 SUPERFAMILY TRAF domain-like 149 321 - -
Tpr3g1561 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 21 327 IPR044286 -
Tpr3g1561 328 MobiDBLite consensus disorder prediction 32 46 - -
Tpr3g1561 328 MobiDBLite consensus disorder prediction 1 50 - -
Tpr3g1561 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 202 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1561 Tpr-Chr3 13968509 13972497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1561 92 188 C3H Transcription Factor Family AT2G41980 37.113 8.17e-18 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1561 K04506 - gmx:100778869 357.451