Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1516 ATGGGTCGTAGAAAAATAGAGATGGAATATCTGAAAGACAAGGATGCAAGGTATGTGGCATTTTCAAAGAGAAAGAATGGTCTTTTCAAGAAAGCAAGTCAATTATCAACTCTTTGTAATGCTAGAGTTGGTGTGTTTGGATTCACTCCTGGTGGCAAACCATTTGCTTTTGGTTCTCCAACTTTTCAAGCTGTCACTAATGAGTACCTTAATGAAGGAAAAGGTGAATCATCAAACCAAAATGTTGCTGAGAATTCTGAAAATGAAAATCTCATCAGTCTCAATGAACAACTTATGGATGTGACCAAAGAGCTGAAGGAGGTGGCAATTACAAAGGACAAAAAAGGTAAAGTCCCTAATATTTCCTATGATGATCTTGATTTAGAGGAGCTTCAAAAAGTGAAGGCTAGATTGAAGGAGCTTCATGGTGACATTGAGGCAGCATCTTCTATGCTTATCCTTGCAAAGGAACCTAGATGA 480 0.3792 MGRRKIEMEYLKDKDARYVAFSKRKNGLFKKASQLSTLCNARVGVFGFTPGGKPFAFGSPTFQAVTNEYLNEGKGESSNQNVAENSENENLISLNEQLMDVTKELKEVAITKDKKGKVPNISYDDLDLEELQKVKARLKELHGDIEAASSMLILAKEPR* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1516 159 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 158 - -
Tpr3g1516 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1516 159 CDD MADS 2 60 - -
Tpr3g1516 159 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Tpr3g1516 159 SUPERFAMILY SRF-like 2 73 IPR036879 GO:0003677|GO:0046983
Tpr3g1516 159 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g1516 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1516 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1516 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1516 159 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g1516 159 Coils Coil 128 151 - -
Tpr3g1516 159 PANTHER MADS BOX PROTEIN 2 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1516 Tpr-Chr3 13614294 13614773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1516 1 156 Type I MADS-box Gene Family AT2G34440 37.931 8.62e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g1516 SRF-TF 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1516 - - mtr:MTR_4g094638 175.252