Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1480 ATGGCGAAAAATCATTCTCAATCTCCCATACCATGTAACAATGATCACAACCATAATCATGAACAAGTGGCTGGTTTTGATTGGATGGTTCTCGTAGCAGCTATTCTATGTGCCATTATTTGTGCTCTTGGTCTTAACACTATGTTACAATGTGCTTTTCAATGTCTTGGTCGTGTAGTAACTGAACCTATTCAATGGATTGCTACTAGGAGGTTGAATTCAGGAATCAAGAAAAAAGAAATGGTAACTTTACCAACTTCAACATATTGTGATGATTTAGGTTCTCCATCTTCATCTTCTAGTTGTGTTATTTGTTTGGGTGAATTCTGTAATGGAGATCAGATAAGGTTTTTACCAAAATGTAATCATTATTTTCATGTTGTTTGTATTGATAAGTGGTTGTTGTCTCATTCTTCTTGTCCTACTTGCAGGAATCTTACTCAAGTTTAG 450 0.3511 MAKNHSQSPIPCNNDHNHNHEQVAGFDWMVLVAAILCAIICALGLNTMLQCAFQCLGRVVTEPIQWIATRRLNSGIKKKEMVTLPTSTYCDDLGSPSSSSSCVICLGEFCNGDQIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRNLTQV* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1480 149 PANTHER OS06G0666500 PROTEIN 12 145 - -
Tpr3g1480 149 Pfam Ring finger domain 101 144 IPR001841 -
Tpr3g1480 149 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Tpr3g1480 149 SUPERFAMILY RING/U-box 101 146 - -
Tpr3g1480 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 148 IPR013083 -
Tpr3g1480 149 SMART ring_2 102 143 IPR001841 -
Tpr3g1480 149 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 12 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1480 Tpr-Chr3 13223829 13224581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1480 27 144 C3H Transcription Factor Family AT3G10910 42.063 2.57e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1480 - K19040 cam:101507208 244.973