Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1471 ATGCCAATGAGTTCAGGTTCAGGAGACAAGCAAGATATGCATGATCAAACTGGTTGCTTTGATCCCAACACAATGGATGAAGGTATTGAAAACTCTCAGAAAGATTACAACACAAACAATAATAATATTAATCTTGAAGAGGATTTCAAGCCTTCTGTGGAAGAGGAACTCTCTTATCACAATCCACAACACCTTGAAGATGTTTCCACCTATACAAATGGTTTCACTCCCTCACCAATAGACATTGAACAGCAAAATCTTGGTTTGAACATTGGGGGCTCTTACAATAACAGCAGCAACAACGACATGGATAACCATTTGGCAAACGAGGTGTATCAGAACTCGACTTGGGACCCTAGTGTTCAGGATATGGACTATATCAATCACCAAGAACACCACCAACTATCTGAACAACAATATCAACAATTTGTTGAGACGCAAAACCATAACCAAAGCTATAATCCCTCTAGCATACTAGACCCTTCTTACTCTTCACCCGATCTCCTTAACCTTCTCCGTTTACCTAGATGTTCAGCTTCATCTTTGCTCACAACTCCATCCAATATTTGCTTGACAAACCCAACTCAAAAAGCACCTAATTTTCATAGCTCAATGAGTTTTCTTGGAGACCTTCCAATAGGATCATCAGATAATACAAGTGGATCATCAGTTTTGTATGATCCTCTATTTCCTTTGAACCTTCCCCCACAGCCACCAGCTCTTAGAGAATTGTTTCAATCTCTCCCTAACGGCTATAGCATGCCGACAAGTTCAAGGAATGGTTCTATTTTCGGTGGAGGGGATGAGATGGAGGGAGATGGAGACATGGGAGTGCTGGAATTCAATAGGGTCACTGCTTCTGTTGGCAAAGGAAGAGGAAAAGCTACAAAGCACTTTGCAACTGAGAAACAAAGAAGAGAGCAGTTGAATGGAAAGTACAAAATCTTGAGGAGTCTCATCCCAAATCCCACTAAGGTGGATAGAGCATCAGTGGTTGGAGATGCTATTGAGTATATAAGAGAGCTGATTAGAACTGTGAATGAGCTGAAATTATTGGTGGAGAAGAAAAGACATGGGAGGGACATGTGTAAGAGACTTAAAACAGAAGATGATGCTGCTGAAAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGAAACATAAGGACCTCATGGCTGCAGAGGAAATCCAAAGACAGTGAGGTTGATGTTCGGATTATCGACGATGATGTTACAATAAAACTGTTTCAGAGGAGGAAGGTTAATTGTCTGCTGTTTGTTTCCAAAGTTCTTGATGAACTTCAGCTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTGTTCAATAGCAAGGTAACTGAAGGTTCATCAGTTTATGCAAGTGCTATAGCCAACAGGGTGATTGATGTTCTGGACACTCAATATGCAGCAGGAGTTCCACATACAAGTAGGCTGTAG 1476 0.4119 MPMSSGSGDKQDMHDQTGCFDPNTMDEGIENSQKDYNTNNNNINLEEDFKPSVEEELSYHNPQHLEDVSTYTNGFTPSPIDIEQQNLGLNIGGSYNNSSNNDMDNHLANEVYQNSTWDPSVQDMDYINHQEHHQLSEQQYQQFVETQNHNQSYNPSSILDPSYSSPDLLNLLRLPRCSASSLLTTPSNICLTNPTQKAPNFHSSMSFLGDLPIGSSDNTSGSSVLYDPLFPLNLPPQPPALRELFQSLPNGYSMPTSSRNGSIFGGGDEMEGDGDMGVLEFNRVTASVGKGRGKATKHFATEKQRREQLNGKYKILRSLIPNPTKVDRASVVGDAIEYIRELIRTVNELKLLVEKKRHGRDMCKRLKTEDDAAESCNIKPFGDPDGNIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRRKVNCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKVTEGSSVYASAIANRVIDVLDTQYAAGVPHTSRL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1471 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 362 IPR036638 GO:0046983
Tpr3g1471 491 SMART finulus 299 348 IPR011598 GO:0046983
Tpr3g1471 491 PANTHER TRANSCRIPTION FACTOR BHLH91 13 485 IPR045895 GO:0006355|GO:0048658
Tpr3g1471 491 CDD bHLH_AtMYC1_like 298 362 IPR045896 -
Tpr3g1471 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Tpr3g1471 491 Gene3D - 286 358 IPR036638 GO:0046983
Tpr3g1471 491 PANTHER TRANSCRIPTION FACTOR BHLH91 13 485 - -
Tpr3g1471 491 Pfam Helix-loop-helix DNA-binding domain 296 342 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1471 Tpr-Chr3 13155942 13158637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1471 13 488 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 36.811 3.04e-86 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g1471 HLH 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1471 - - gmx:100782512 667.537