Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1455 ATGGCATCATCAGAAGTTGAAATTGCTTCTTTTAATTTATCACAAAATCAGAAAACTCAAAAACCAACATGGGTTTCAAGAGTTGCTAAAAACAATAACAACCTTGGAACTCTAAAGTTCAACAAAAGATTTCATAATGTGTTTAGTGAGCAAGATGATTCTTCATTGTCTGCATTGGTTAGTCCAAGGCACTCGAAGATCGTTGATCGATGGGCGACAAGACAGGCTCAAGAAGTGGTGACAAATCTTGGAAAAAAGAATAATGAGGATGCAGTTAAGGTGTTTGATAAATTTTCTACAAGATCATCAAGTTTCAATTATAGGAGAGGCAGAGAAGATTCTGTTTCGCCTCCTCGTTCTGATGGGTCGTCTGATAGCGAAAAAGCATCGGGCCTTGGTGCTTCTTCCCTTGTTAGGATTTGGGAAAAAAGGCTCAACAACCAATCCAATTGCACAAAACAAAATGTACCATTAGCCGGAAGAACTAATTCGGATTCGAGCTGTAATGACACTAATGCATGTTCTGTGGAAGATCATGGTAGGGTATCAGAAGAAGAGGATTCCTCCGATGAACCATTTACATGTTGGGAATATGATAAAACAAAAGTTAGTACTGATCAAAATTGTTTACCAAAAGTGAAATGTAATTCAGATGCTGTTGAAAGTGAGAAGAGCAAGGTTGCTGATATTATAAAGAGACTCTATGTTGACAATGATCAAGAGTTAAGTAATGGTGCGGCAAGTTCTCCATTTAGAGAGCGTGATTGTGTTTCCACACCGAAACAATTAATGGAACATAAAAGTTTTGGCAAGGTCAGAAGCCACCCACGTATTAGGGGGCGCCAAGCATTCAATGATTTGATGACGCATTTTGAGTGTGATCGACATGGAGAGCTCAACAATCTTGCAGAACGAGGCGCGGTTTCTAAGTTCACACAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTACAACGTGGAGTAGCAGTTTTTGATCCATCTCGCCCGAAATCAACAAGACATGGAGGGAATAAACATCAACAAGGATCAACAGGACATGAAGGGAATAAACAACAGCAAGGATCAGTAATTATGCAACTAAGGGAAAGATTTGACACAAGAGATGAACGGAGAATTTCATCCCTGAAAGAAGTCACTGTCATCCATTGTAAGAAACATACACAAAATCCTGTGTCTCAAACTAATGCAGGTGTAAAAGAAGAAGAGCATCTAAGTTGTGGTTTTGAAGCTCAAAATGATGATCCAAAAGAAACTGTTGAGGAATCTTCATCAAAGGTTGATTCAAATGCAAATGAAATGGTTGATGAAGTAGAGGCAAGAGACCAACAATTATATGATACTATTGAAACCGACTACAACGAGATATTAGAAGAGAAAGAGTGTAGTGAGTATAATTATGATGAAACTAGCGCAAGTTATGACTGGATCAGTTCTATTTCTCGGCCTAAAAGCTATTGGGAGGAACTCAGGCAAGAATGGTATAGGGAAGTTCTTGACTTTGGTTCAGGCAATGATGAGAGACGCGAACTTCTTCAAAGAAAAACAGTTTCAACTGTCCTTTGTAGCGATTTTCGAGAAAGGATGGATAAATTGATGAAGTCTCACGTGGGAACACAAACACACTTAGTCAGTAATCAACACGACGAGGAAGATCCAGAAGAGAGTATGGAAAAATTGATGGCATTTTATTATGATCGCTTGCGCGTTAGAGGCAGTCCCGAAGAAGATGGAAAAGATAGAAACGAAAAAGAAGTGTCAGAGGAAGATGAATGCATCAATAGCGGTTCAGATCATGAACTTGGTGATTGTCATAGTGGTTCAGATCATGAACTTGGTGATTGTTCACCATCAATACATACACCATCATCAACAACATGGAGTTATAGAGACACTGACGGCGGGGATGATTCTGCTAGAGCTGCATTTGTATCTTCACCATTGCATTCTCAACCTTTCTATCCAGATAGTAGGCTATCTTCACCCGCAAATCAGCCTTCAATTGAAATGGAAATCATATACCATTTGCGAGGGCAAATGGAACTACTTTATCAAGAGATGTCCGAGCTAAGGAAAACACTAAAAAACTGTACAGACATGCAGATGCAAATGCAATTACAACAATCCCAGAATCAAGCAGTTCACAAAGTTAAAGGAAAGAAAAGCAGTAACAAGAAATCAAAGAAAGGAAATTGTTGCATTTGCAATGAAAATAAAGTAAACTCAGTTTTATACAGATGTGGTCACATGTGTGCATGTCTCAAATGTGCCAAAGAGTTGCAATGGAAAAGTGGAAAATGTCCAATATGTCAAGTTGAAATAATAGATGTTGTCAAAGTACATACTAACACATAA 2379 0.3855 MASSEVEIASFNLSQNQKTQKPTWVSRVAKNNNNLGTLKFNKRFHNVFSEQDDSSLSALVSPRHSKIVDRWATRQAQEVVTNLGKKNNEDAVKVFDKFSTRSSSFNYRRGREDSVSPPRSDGSSDSEKASGLGASSLVRIWEKRLNNQSNCTKQNVPLAGRTNSDSSCNDTNACSVEDHGRVSEEEDSSDEPFTCWEYDKTKVSTDQNCLPKVKCNSDAVESEKSKVADIIKRLYVDNDQELSNGAASSPFRERDCVSTPKQLMEHKSFGKVRSHPRIRGRQAFNDLMTHFECDRHGELNNLAERGAVSKFTQRGRIQSLLRLRLLQRGVAVFDPSRPKSTRHGGNKHQQGSTGHEGNKQQQGSVIMQLRERFDTRDERRISSLKEVTVIHCKKHTQNPVSQTNAGVKEEEHLSCGFEAQNDDPKETVEESSSKVDSNANEMVDEVEARDQQLYDTIETDYNEILEEKECSEYNYDETSASYDWISSISRPKSYWEELRQEWYREVLDFGSGNDERRELLQRKTVSTVLCSDFRERMDKLMKSHVGTQTHLVSNQHDEEDPEESMEKLMAFYYDRLRVRGSPEEDGKDRNEKEVSEEDECINSGSDHELGDCHSGSDHELGDCSPSIHTPSSTTWSYRDTDGGDDSARAAFVSSPLHSQPFYPDSRLSSPANQPSIEMEIIYHLRGQMELLYQEMSELRKTLKNCTDMQMQMQLQQSQNQAVHKVKGKKSSNKKSKKGNCCICNENKVNSVLYRCGHMCACLKCAKELQWKSGKCPICQVEIIDVVKVHTNT* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1455 792 CDD mRING-HC-C3HC5_NEU1 740 778 - -
Tpr3g1455 792 ProSiteProfiles Zinc finger RING-type profile. 740 779 IPR001841 -
Tpr3g1455 792 MobiDBLite consensus disorder prediction 106 131 - -
Tpr3g1455 792 MobiDBLite consensus disorder prediction 333 363 - -
Tpr3g1455 792 SUPERFAMILY RING/U-box 739 785 - -
Tpr3g1455 792 MobiDBLite consensus disorder prediction 345 363 - -
Tpr3g1455 792 Pfam Zinc finger, C3HC4 type (RING finger) 737 784 - -
Tpr3g1455 792 Coils Coil 688 708 - -
Tpr3g1455 792 PANTHER BNAC05G24000D PROTEIN 409 791 - -
Tpr3g1455 792 PANTHER BNAC05G24000D PROTEIN 12 441 - -
Tpr3g1455 792 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 714 790 IPR013083 -
Tpr3g1455 792 MobiDBLite consensus disorder prediction 582 606 - -
Tpr3g1455 792 MobiDBLite consensus disorder prediction 545 564 - -
Tpr3g1455 792 PANTHER BNAC05G24000D PROTEIN 12 441 - -
Tpr3g1455 792 PANTHER BNAC05G24000D PROTEIN 409 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1455 Tpr-Chr3 12985901 12990202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1455 726 792 C3H Transcription Factor Family AT3G06140 35.294 2.71e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1455 - - mtr:MTR_4g094795 987.252