Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1428 ATGGCTGTTCCAAGTTCAGTTTTGAAGGTAGAAGAAATTCAAGGTAGAGGAAGAGGAATAGTTGCATCTCAACCTCTCAAAGCTGGCCAAATCATCCTCACAGATTCACCAATCCTTCTATACCCTGTTTCCCCCTTTACTCCACATTCATCTTCCTTTTGTGATCATTGCTTCAAATCATTGCAGCATCAATCTTCAATTGTTTCGTGTCCTTCGTGTCACCAATATCGTTTTTGCAATTCAATTTGTCTCTCGAAAGCTCTCGGTTCTTCGCACTCAACATGGGTTTGTCAATCATTATCTCAACTCCAAACCAATTCGGTTCTTGTTCAACAACCCCTCGAACGCCAACTACAAGCTCGTTTTCTTATTGCTGCTTACAATCTTGCTGTTACCGCCCCGTCAAATTTTCAAATTTTGTTATCTCTACAAGGTTCTCATGATAATGATGATGCAGCTCAGTTCCTACACTCCGTTATTTCATCCCTATTTTCAGGTTCATACCCGCGTAATGAGTTGTTTTCATTGCAACTCACGTCTTCGCTCCTTGCTAAGGATAAGCTCAATGCTTTTGGTTTAATGCATCCTTTCTCTGAAAATGATGAGAATAGGTCTGTTAGAGCTTATGGCATTTACCCTTATGCATCCTTTTTTAACCATGATTGTCTTCCCAATGCGTGTAGATTTGATTATGTTGATGTTAATCCACCTTATCACGCCGACGGTCTTAATAATACTGACTTTGTTATAAGGATGATTCATGATGTTCCTCAAGGTAGGGAGATTTGTTTGAGTTATTTTCCTGTTAATGAAAACTATTCTAGTAGGCAGAAGAGATTGTTGGAAGACTATGGTTTTGCGTGTAATTGTGATCGATGTACTGTTGAATCGAATTGGTCGGATAATGAGAGCGTTGAAGGAAATGTGGAGGAGGATGATGGACAAGAGGTTATGGTTATGGATGATGATGAGGAGGAGGAGCAAAATGAAAATATGGAACCATCAGACAATGACAATAATGATTTCCCACATGCTTATTTCTTTTTAAAATACATGTGTGATAGAACAAATTGCTGGGGTACTTTGGCTCCTCTACCGCCACAGGGTGATGCATTATCTAATGTTATGGAATGTAATGTCTGTGGTAAATTGAAGAGGGACGATGACGACGTGAATATTGATGATAAAAGGCAAGATGGAGTTGCCATGGAGGACTGA 1218 0.3966 MAVPSSVLKVEEIQGRGRGIVASQPLKAGQIILTDSPILLYPVSPFTPHSSSFCDHCFKSLQHQSSIVSCPSCHQYRFCNSICLSKALGSSHSTWVCQSLSQLQTNSVLVQQPLERQLQARFLIAAYNLAVTAPSNFQILLSLQGSHDNDDAAQFLHSVISSLFSGSYPRNELFSLQLTSSLLAKDKLNAFGLMHPFSENDENRSVRAYGIYPYASFFNHDCLPNACRFDYVDVNPPYHADGLNNTDFVIRMIHDVPQGREICLSYFPVNENYSSRQKRLLEDYGFACNCDRCTVESNWSDNESVEGNVEEDDGQEVMVMDDDEEEEQNENMEPSDNDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDALSNVMECNVCGKLKRDDDDVNIDDKRQDGVAMED* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1428 405 Gene3D SET domain 19 293 IPR046341 -
Tpr3g1428 405 Pfam SET domain 17 266 IPR001214 GO:0005515
Tpr3g1428 405 SUPERFAMILY SET domain 4 288 IPR046341 -
Tpr3g1428 405 Gene3D - 53 106 - -
Tpr3g1428 405 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 3 395 IPR044238 -
Tpr3g1428 405 CDD SET_SMYD 199 293 - -
Tpr3g1428 405 Gene3D - 111 190 - -
Tpr3g1428 405 SMART set_7 6 273 IPR001214 GO:0005515
Tpr3g1428 405 ProSiteProfiles SET domain profile. 3 267 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1428 Tpr-Chr3 12698567 12701770 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tpr3g1428 SET 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1428 - - gmx:100783406 545.043