Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1353 ATGGCCGAAATGGGTGAAGAAAAGCAACACAGTATTCCCGCTTTGCCATGGATGAGAGACCCTGTCGACATCACTCTCTCTCAACAACTTCCGCTGGATTCTGTTCCTTCTCTCCACCCCAAGTTGAAGTCAGCGCTGGAGGACTTGGGAATCTCAAACCTATTCCCAGTGCAAGTCGCAGTTTGGCACGAAACGGTTGGCCCTGGCAATTTTGAGCGAGACATTTGTGTTAACTCACCCACTGGAAGCGGCAAAACCCTCGCCTACGCTCTCCCCTTAGTGCAGATGCTATCTGATCGCATCACTAGATGTCTCCGCGCCTTGGTTGTGGTCCCCACTCGCGACCTTGCTTTGCAGGTCAAACAAGTCTTTGATGCCATTGCGTCTCCATTAGGCCTGCGCGTTGGCTTGGCCGTTGGTCAATCATCCTTAGCCGACGAGATTTTCGAGCTCGTTGAAATGCCGGCACATGATATAAGCACCTACTATGATCCGCATCACGTTTCACTTCCTCGCTTTCAGAGTAAGGTCGACATATTGGTAGCAACCCCTGGCAGGCTTATGGATCACATTAATACTACCAAAGGCTTCACGCTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGTTGCTTCGTGAGGCATACCAATCATGGTTGCCTACTGTGCTTGAACTGATCCAATCTAATGATGACGGTTTTTTCCAACCGGCTGATTCTTTTTTCCCCTGTTCTGTTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTTGAGAGGGGATTCAAGGACAAGCCTTATCCCAGGCTGGCAAAAATGGTTCTATCCGCGACATTAACTCAGGATCCAGGCAGGATTATTCAGCTTAATTTGCATCACCCTTTATTATTGAAAGCTGGACAAATGCGTTATCGGCTCCCAGAAAATTTGGAATCTTTTAAACTGATTTGTGATAAAAATGTGAAACCCTTGTACTTAATTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCCTAGTTTTTACAAAATCTGTGGATTCAACGCACCGTCTCTGCCAATTGCTGAATTGTTTTGAAGATCTACAAATTGATATCAAGGAGTATTCTAGTCTTCAACATCAACGTGTAAGAAGCAAGACATTGAATGAATTTCGGAAGGGGGTGTTTCAAGTGCTTGTATCTTCTGATGCGTTGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGATGTGCCCAAATACATAAAAACTTATGTTCATCGAGCTGGTAGGACTGCAAGAGCAGGCCAGACTGGGCGTTGCTTCACACTGATGTCAGAAGATGAGGTTCGACGATTTAAGAAGTTGATGCGAAAGGCTGAGGGTGGTTCTTGTCTAGACCATAACATTTCATCCAGTCTAATTGAAGCACTCTATACTTCCTACCAATCAGCACTGACAAAATATAAGGTGATAATTTCAAAGACACAAAAGAAACCCAAGAAGTAG 1503 0.4464 MAEMGEEKQHSIPALPWMRDPVDITLSQQLPLDSVPSLHPKLKSALEDLGISNLFPVQVAVWHETVGPGNFERDICVNSPTGSGKTLAYALPLVQMLSDRITRCLRALVVVPTRDLALQVKQVFDAIASPLGLRVGLAVGQSSLADEIFELVEMPAHDISTYYDPHHVSLPRFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELIQSNDDGFFQPADSFFPCSVGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRIIQLNLHHPLLLKAGQMRYRLPENLESFKLICDKNVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCQLLNCFEDLQIDIKEYSSLQHQRVRSKTLNEFRKGVFQVLVSSDALTRGMDVEGVRNVINYDVPKYIKTYVHRAGRTARAGQTGRCFTLMSEDEVRRFKKLMRKAEGGSCLDHNISSSLIEALYTSYQSALTKYKVIISKTQKKPKK* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1353 500 Pfam Helicase conserved C-terminal domain 323 434 IPR001650 -
Tpr3g1353 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 484 IPR001650 -
Tpr3g1353 500 Gene3D - 311 500 IPR027417 -
Tpr3g1353 500 PANTHER RNA HELICASE 30 476 - -
Tpr3g1353 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 455 IPR027417 -
Tpr3g1353 500 CDD SF2_C_DEAD 311 442 - -
Tpr3g1353 500 CDD DEADc_DDX51 42 298 - -
Tpr3g1353 500 Gene3D - 21 301 IPR027417 -
Tpr3g1353 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 66 298 IPR014001 -
Tpr3g1353 500 Pfam DEAD/DEAH box helicase 56 284 IPR011545 GO:0003676|GO:0005524
Tpr3g1353 500 SMART ultradead3 50 314 IPR014001 -
Tpr3g1353 500 PANTHER ATP-DEPENDENT RNA HELICASE DDX51 30 476 - -
Tpr3g1353 500 SMART helicmild6 353 434 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1353 Tpr-Chr3 12012555 12021525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1353 74 456 Eukaryotic Initiation Factors Gene Family AT1G72730 24.093 2.77e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1353 K14807 - tcc:18596452 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1353 3 12012555 12021525 Tpr3g1353 3 12012555 12021525 ECH