Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1346 ATGAAACTTTCTTCAGCTGGGTTTAGTCCTCCACCTGAGGAAGGAGAAAAACGGGTTCTAGATTCGGAACTTTGGCATGCTTGTGCTGGTCCTCTTGTTTCTTTGCCGGCTGATGGAAGCCGCGTCGTTTACTTTCCACAAGGCCACAGTGAACAGGTTGCTGTATCTACCAACAGGGAAGTTGATACTTATATCCCGAATCCAAGTTTACCTCCTCAACTTATTTGTCAACTTCATAATTTGACTATGCATGCAGATACGGAGACAGATGAAGTGTATGCGCAGATGACCTTGCAGCCTCTAAATCCTGAAGAGCAAAAAGAGGCATATCATCCTGCAGAGTTGGGAACGGCAAACAAACAGCCAACAAACTACTTCTGCAAAATTTTGACAGCCAGTGATACAAGTACTCACGGTGGATTCTCTGTTCCTCGCCGGGCAGCTGAAAAAGTTTTTCCTCCACTGGACTTTTCACAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTACATGGTAATGACTGGAAATTCAAACATATCTTCCGAGGTCAGCCCAAGAGGCATTTACTTACAACGGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTAGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAATCAATTGCTTCTTGGCATTCGGCGTGCTAATCGACCCCAACATATGATGCCTTCATCAGTGTTGTCAAGTGATAGCATGCACTTAGGGTTGCTGGCTGCTGCAGCTCATGCAGCTGCAACGAACAGTCGTTTCACCATTTTCTATAATCCACGTGCTAGCCCATCTGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTATATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTTTTTGAAACAGAGGAATCTAGTGTTCGGCGATACATGGGAACAATAACTGGCATCAGTGACCTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGTTCAGTAAAGGTTGGCTGGGACGAATCCACTGCAGGTGAGAGGCAACCTAGAGTGTCTCTATGGGAAATTGAGCCACTAACAACATTTCCGATGTATCCATCTCCATTCCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGATTGCCTGCATTCCATGCAGGCTTGAAGGATGATGATTTTGGCATGAATTCTCCATTATTGTGGCTACGAGATGCAGATAGAGGGCTTCAGACTCTTAATTTTCAAGGGATGGGTGTTAACCCTTGGATGCAGGCAAGGCTCGATCCGTCCATGATGAATATGCAACCAGACATGTACCAAGCTATGGCAGCTGCTGCACTTCAGGATATGAGGACTTTAGATCCTTCTAAACAGCATCCTGCATCCTTACTTCAATTTCAGCAGCCACAGAATTTCCCCAATGGTAATGCTGCTTTAATGCAAAACCAGATGTTGCAGCAATCTCAACCTCAGCAAGCTTTTTCAAAGAATCAAGAAAGTCAGCTTCCATCTCAGTCTCAGGCTCAAACACAAAATTTTCAGCAGCTTCTTCAGAATCAGCACTCATTCACTAATCAAAGTTATCATCATCTGCAGCAACAGCAACAACTACAACAACAGCAACAACAGCAACAGCAGCAGCAACAACAACAACAACAGCAGCAGCAACAGCAACAACAGCAGCAGCAGCAGCAACAAGTTGTAGATCGTCAGCAAATTTCAAATGCTGTCTCTACAATGTCTCAGTTTGTTTCTGCACCACAATCTCAATCAACACAGCCCATGCAAGCTATCTCTTCAATTGGCAATCAACAACATTTTTCTGATTCAAATGGGAACCCTGCAACTACTGCTATTGTTTCTCCTTTGCACAATATGTTAGGTTCATTTCCTAATGACGAAACATCTCACCTTCTCAACCTTCCTAGACAAAACTCTTGGGTTCCTGTTCAATCATCAACTGCATGGCCCTCGAAACGCATTGCAGTTGATCCTCTCCTTTCTTCCGGAGCATCTCATTATGTTCTCCCTCAAGTCGAGCAGCTAGGGCAGTTACAAACTACCATTTCTCAAAATGGCATTACCTTGCCCCCATTTCCTGGTAGGGAGTGTACAATAGAAGGGAACACTGATCCACAAAACCATCTGTTGTTTGGTTTTAACATAGAGCCCTCATCACATCTAGTTTATAATGAGATGTCAAATCTTAAGAGGGTCAATAGCAACTGTGACTCATCAGCTGTACCTTTTCAATCTTCTACGTACCTGAATACCACAGGTGCCGATTCTTCATTGAATCCTGGAATGACACACAGCATTGGTGAGTCGGGCTTCCTGCAAACTCCAGAAAATGGAGGTCAAGGGAACCCACCAAACAAAACCTTTGTGAAGGTTTACAAATCAGGGTCCTTCGGAAGATCGTTGGATATCACTAAATTCTCCAACTACCCCGAGCTACGCAGTGAGCTTGCTCGCATGTTTGGGCTTGAAGGTGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTTGTTGATCAGGAGAATGATGTTCTTCTCCTCGGTGATGGTCCATGGCCGGAATTTGTAAATAGTGTATGGTGTATCAAGATACTTTCCCCTCAAGAAGTGCAACAAATGGGGAACAATGGTCTAGAGCTTCTGAACTCAGCTCCAACTCAGAGGCTCTCCAATGGAATCTGTGATGACTACACCGGCCGCGAGGACTCTAATTTAAGCACCGGGTTAACAACTGTGGGGTCTTTAGACTACTGA 2775 0.4472 MKLSSAGFSPPPEEGEKRVLDSELWHACAGPLVSLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLTMHADTETDEVYAQMTLQPLNPEEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPAFHAGLKDDDFGMNSPLLWLRDADRGLQTLNFQGMGVNPWMQARLDPSMMNMQPDMYQAMAAAALQDMRTLDPSKQHPASLLQFQQPQNFPNGNAALMQNQMLQQSQPQQAFSKNQESQLPSQSQAQTQNFQQLLQNQHSFTNQSYHHLQQQQQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVVDRQQISNAVSTMSQFVSAPQSQSTQPMQAISSIGNQQHFSDSNGNPATTAIVSPLHNMLGSFPNDETSHLLNLPRQNSWVPVQSSTAWPSKRIAVDPLLSSGASHYVLPQVEQLGQLQTTISQNGITLPPFPGRECTIEGNTDPQNHLLFGFNIEPSSHLVYNEMSNLKRVNSNCDSSAVPFQSSTYLNTTGADSSLNPGMTHSIGESGFLQTPENGGQGNPPNKTFVKVYKSGSFGRSLDITKFSNYPELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLELLNSAPTQRLSNGICDDYTGREDSNLSTGLTTVGSLDY* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1346 924 CDD B3_DNA 125 226 IPR003340 GO:0003677
Tpr3g1346 924 Gene3D - 124 227 IPR015300 -
Tpr3g1346 924 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Tpr3g1346 924 Pfam Auxin response factor 252 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Tpr3g1346 924 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 547 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr3g1346 924 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 548 905 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tpr3g1346 924 Pfam AUX/IAA family 789 877 IPR033389 -
Tpr3g1346 924 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Tpr3g1346 924 SUPERFAMILY DNA-binding pseudobarrel domain 111 255 IPR015300 -
Tpr3g1346 924 SUPERFAMILY CAD & PB1 domains 788 867 - -
Tpr3g1346 924 MobiDBLite consensus disorder prediction 483 508 - -
Tpr3g1346 924 Gene3D - 789 881 - -
Tpr3g1346 924 SMART B3_2 126 228 IPR003340 GO:0003677
Tpr3g1346 924 PANTHER AUXIN RESPONSE FACTOR 1 547 - -
Tpr3g1346 924 PANTHER AUXIN RESPONSE FACTOR 548 905 - -
Tpr3g1346 924 ProSiteProfiles PB1 domain profile. 792 876 IPR000270 GO:0005515
Tpr3g1346 924 Coils Coil 529 565 - -
Tpr3g1346 924 Gene3D - 290 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1346 Tpr-Chr3 11927050 11933258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1346 1 924 B3 DNA Binding Superfamily AT1G30330 68.553 0.0 1150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tpr3g1346 AUX_IAA 2.8e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1346 - - gmx:100777789 1494.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1346 3 11927050 11933258 Tpr3g1346 3 11927050 11933258 ECH
Tpr2g4849 2 54059642 54066836 Tpr3g1346 3 11927050 11933258 PCT