Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1342 ATGGGTCGTCGCAAAATTAAGATTGAGATAGTGAAAGACCCCAACACGAGGCAAGTCACATTCTCAAAGCGTCGAACAGGTTTATTCAAGAAAGCAAATGAATTATCTATTTTGTGTGGAGCAGAAGTAGCTATTGTTGTGTTTTCTCCCGGGAACAAGCCTTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCAGCCAAGTATCTTCAACAAGATCCCGAACCAAGTGACTCCCAAGGAGAGCTCTCTTCCGATGCTTCCAATATTGACAACTTGAATCTGGAACTTGCTGAGGTATTGGCTGAAATTCGTGAAGGTGAAAAACAGGCTGAGATTTATGATGAGATATTGAAACAAAATGATGTGACAACACTCTCCGAGCTTGAAGAATTGAGAGATTCATGCAAAAGGCTTCAAGATTGGGTAAAATTGTGTCTTAGTGATATCGAGATATCAGAATATATGATGTTGCTTGCTAAGGAGCCGGTGGTAGGGGTTAAAGCAACAAAAAAGAATAGAAGAAGAAATTAA 534 0.4026 MGRRKIKIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGAEVAIVVFSPGNKPYSFGHPGVDVVAAKYLQQDPEPSDSQGELSSDASNIDNLNLELAEVLAEIREGEKQAEIYDEILKQNDVTTLSELEELRDSCKRLQDWVKLCLSDIEISEYMMLLAKEPVVGVKATKKNRRRN* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1342 177 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1342 177 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1342 177 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g1342 177 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Tpr3g1342 177 CDD MADS 2 60 - -
Tpr3g1342 177 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1342 177 PANTHER MADS BOX PROTEIN 2 170 - -
Tpr3g1342 177 Coils Coil 90 110 - -
Tpr3g1342 177 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 170 - -
Tpr3g1342 177 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g1342 177 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Tpr3g1342 177 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1342 Tpr-Chr3 11875254 11875811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1342 1 161 Type I MADS-box Gene Family AT2G34440 44.571 1.12e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g1342 SRF-TF 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1342 - - mtr:MTR_4g131030 243.047