Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1339 ATGGTACACAACAGGTCTATTATCTCTCACAATATAGACAGTGGTTGCTTTCCTTCTCCACACCTTGATGCTTTTCCAGCTGGTTTACGAGTTCTCGTTGTCGATGATGATCCAACATGGCTTAGAATCCTTGAAAAAATGCTCAAAAAATGCTTTTACCAAGTTACCACATGTTGTTTAGCAATAGAGGCTCTTAAGAAGCTTCGCGAAAAGAAAGATGCATATGACATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAACATGTTGGACTTGAAATGGATCTTCCTGTCATTATGATGTCTGTTGATGGAGAAACAAGTAGAGTGATGAAAGGTGTTCAACATGGAGCATGTGATTATTTGCTTAAGCCTATAAGGATGAAAGAATTGCGAAATATATGGCAACATGTCTTAAGAAAAAGAATACACGAGGCAAGAGAATTTGAAACTTTTGAGGGCATTCACTTGATGAGAAATGGATCGAATCACATTGATGACGGTAACCTGTTTGCTGTAGGAGGAGAAATGAACTTAATGAAGAAAAGAAAAGATTTAGATAATAAACATGATGACAAAGAATTTGGAGATCAAACTTCTTTAAAGAAAGCTAGAGTAATTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCTGTGAATCGAATTGGATTCGATAAAATTGGTCCGAAGAAAATTCTCGATTTGATGAATGTTCCGTGGCTTACTAGAGAAAATGTTGCTAGTCACTTGCAGAAGTACCGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAGTATTCCACAGGTGGAATAAAGTATTTCGATTTACCTTCAAAAGATTCAGGATGTGTAAGTTTTCTCGACTCTCTTAACAAGCAACAAAACGATGGTGCAATCGACAATTTCAGATATTCGGATGGGACATTAAAACTTCATATGGAGAGTACAAGTCATGAAGTTGATCTCAATGGAATTGTGACAAGGCCAACAATAGACAAAATAAGAGCTTCAGTTAGTGATATTATTGATCCAAAGATAAGAAAGTGTTCACAGATAGGCCATAATCAACCATATGAGTCTGCAGAATCAGAAGTAAATCATACAGTTTTTGAGTACTCCACCGTTTCGACACAATGCTCTTGGAATGAAGTTCCAAAAATGCTACTGAAAGAAGAACAAAATACACAGAAGCACTTCCAAATTGATCAATCACAATCAATGAATTCCGATCCCTCCGGTTACACAAGTGATTACATTAGTCCTGTGAATTCAATGGCGTTGGAAGTTGTCACCTTTCCTAGTCAATCCAAAAGCCTCGTCGCGAATGATCAATCTCCAGATATCGTTTTCACTTCAAATTTGAGTTCGAAAGCACCAGGATATAATCTCGGTTGCATTTCTGATATGGAAATTTACCAAAGAAACCTACTTTTGGATAGCCATGCAGCCTTAACACCTTTGGATGAAGACTTACATTTACTTTTGTTACAAGGTGAATACTATAATATGAACTTTGGCATGCAGAATATAGAGATGTCTGAGTATTCTGATCCATGGATTATTGCTGAAGTACCTACCAATTTGTATGATTCAGCAGATTATTCATAG 1635 0.3694 MVHNRSIISHNIDSGCFPSPHLDAFPAGLRVLVVDDDPTWLRILEKMLKKCFYQVTTCCLAIEALKKLREKKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAREFETFEGIHLMRNGSNHIDDGNLFAVGGEMNLMKKRKDLDNKHDDKEFGDQTSLKKARVIWSVDLHQKFVKAVNRIGFDKIGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKYSTGGIKYFDLPSKDSGCVSFLDSLNKQQNDGAIDNFRYSDGTLKLHMESTSHEVDLNGIVTRPTIDKIRASVSDIIDPKIRKCSQIGHNQPYESAESEVNHTVFEYSTVSTQCSWNEVPKMLLKEEQNTQKHFQIDQSQSMNSDPSGYTSDYISPVNSMALEVVTFPSQSKSLVANDQSPDIVFTSNLSSKAPGYNLGCISDMEIYQRNLLLDSHAALTPLDEDLHLLLLQGEYYNMNFGMQNIEMSEYSDPWIIAEVPTNLYDSADYS* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1339 544 Pfam Myb-like DNA-binding domain 214 261 IPR001005 -
Tpr3g1339 544 CDD REC_typeB_ARR-like 31 145 - -
Tpr3g1339 544 SUPERFAMILY Homeodomain-like 207 266 IPR009057 -
Tpr3g1339 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 526 - -
Tpr3g1339 544 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 526 IPR045279 GO:0009736
Tpr3g1339 544 SUPERFAMILY CheY-like 28 161 IPR011006 -
Tpr3g1339 544 ProSiteProfiles Response regulatory domain profile. 30 145 IPR001789 GO:0000160
Tpr3g1339 544 SMART REC_2 29 141 IPR001789 GO:0000160
Tpr3g1339 544 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 209 262 IPR006447 GO:0003677
Tpr3g1339 544 Gene3D - 205 268 - -
Tpr3g1339 544 Gene3D - 29 171 - -
Tpr3g1339 544 Pfam Response regulator receiver domain 31 140 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1339 Tpr-Chr3 11848263 11851488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1339 22 274 Response Regulator Gene Family AT2G25180 56.250 1.23e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr3g1339 Response_reg 1.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1339 - K14491 gmx:100778324 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr2g4722 2 52581743 52586639 Tpr3g1339 3 11848263 11851488 PCT