Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1326 ATGGCGGGAACGTGTTGTATGAACCACCATTTCCCTCTTTTTGTTCTTCATCTTCTTCTCCGATCCAACAACAGCGATAGCAAAAAAATGCAGTTTGATTCCGATTCAGATTCCGACGGATCTCACATCTCTTCAACTCCTCCAAGACAACCAAATCCACCACCACCACCGTCACCAAAACCACCTCTTCCAGTTTCCAACAAAAAATCCAAAATCAATACCAAACCCAAACCCTCAAAATCCAATAAACTCCCTTCAAAACCCCCCGAAACTCTCCCCCAACAAGATCCTGACCCTGACCCTTTCCCTCTCGCTTCCTTCTCCTCCCTTCCTTTTCATATCCGACAACGAACCTCCGAAGCCGCTTCAACTTCATCTTCCCACTCAATTGAAACCCTCCCCGCTGGATTCTTCTCAAAATCAATTTCATTCTCCAAAATTCGTAAACCCTTACTCAATCTAGAAGCTTCTGAAAACGAACCCGTAGTTAATTCCCCTAAAGCCGTTGTAAAATCCGCTAAGAAGCATCCTAATTTAATAGGCGCCAGTGCTCCAACGCCGATAGTGAAGGTACTACGAGGCGCCGGAGAAGGTAATTTTGTGAAATTGAATTTGAATGGTAAGAGAAAAAAGTTTTTGAATAAAGGTTGGAACAAAAAAGGAAAATTTGGCAGTGGAAAAAGGTATAGAAATGGTTATAGTAGTTATAGTGGTAGTAGAAGTAAGCGTAAGAAATTGGAAGCTGAAGGGGGAGATAATGAGGAAGATGGTTTGGATGAAGAGAATGCAAAGCAACAGGAAAAGCGAAAGGGTTGGGAAAACGAATGCAAAGTATTGGAGGAGGCTGTGTTAGCAGCAAGAAATGAGGCTTCTGATGAGAATTTGGTGAAGCTGTTGAAATTGATTCATGGTTATGATTCTTTTCGAGAGGGGCAACTTGAGGCTATCCAGAATGTTCTTGCTGGGAAATCGACAATGCTTATTTTGCCGACTGGTGCAGGGAAGTCGTTGTGTTATCAGTTGAGTGCATTGATTTTGCCCGGGATTACGCTCGTTGTTAGTCCGTTGATAGCTTTGATGATTGATCAGCTTAGGCAATTGCCTCCGCTCATTTCGGGTGCTCTCCTAAGCAGTTCTCAGACGCTTGAAGAATCATCTGAAACGCTCAGCCAGGTCCGGCAAGGCACAATTAAGGTGCTTTTTGTTTCACCAGAGCGGTTCTTGAATGAAGAGTTTCTATCTGTTATCTCTGCTGTGTCATCCGTGTCACTCGTTGTTATTGATGAAGCACATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCACTACTTCATAAAAGTCTTAATGTAGGTTCTGTTCTTGCAATGACAGCGACTGCTACAACCACGACTTTAGACGCCATCATGTCTGCCCTAGATATTCCTTACACAAATCTTATTCAGAATGCACACTTAAGGGACAATTTGCGTTTGTCAGTGTCTTTGATAAAAAATAGAATGAAGGACCTACTGGTTCTGATAAAGTCTTCTCCTTTCACGGAAGTTAAAAGCATCATAGTATACTGCAAATTTCAGTCTGATACTGATCAAATCAGCAGATACTTGAATGATAACAATATCAAGGCAAAGAGTTATCATAGTGGTATTTCTGCAAAGGAACGTGGCTATGTACAAGAGTTGTTTGGTTCAAACAAGATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTGGACAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTACCCGAAAGTCTGGAAGAGTATGTACAGGAGATAGGACGTGCTGGAAGGGATGGGAGGTTGTCCTATTGTCACCTATTTTATGATGATGAGATGTATTTCAAACTTCGTAGTCTAATGTACAGTGAAGGAGTAGATGAGTATGCTGTGAATAAATTTATGTCTGAAGTATTTCCTGCTGACAAAAGCTCCTGTGGGAAAATCTGTTCGTTAATCAAAGAATCTGCTGCACGCAGATTTGATATGAAAGAAGAGGTAATTCTCACAGTTTTGACACGCTTGGAGCTGGGTGACATGCAATACTTACATTTACTTCCACAAACAAATGTTACCTGTGTTCTGAATTTTCATATGACTCCGGCTGTGTCCCTTGCCCAGAAGGTTTCTGCTATTGCTGTGATTCTAAAAAGATCTGAAAATAAGCACGGACAATATATTTTTGATATTCCAACTGTGGTAAATGACATGGGGGTTACACCAGTTGAATTAACAGATCAGTTGTACGACCTAAAGTTGAAGGGAGAAATAACTTATGAAATGAAGGACATGGCCTACTGTTATAGGATTCTTGAAGTCCCAACAGACTTTTTTTCTCTATCGGATGATATTACCAAATGGTTATCTGAAGTTGAAAGTTGTAAGGTACGGAAAATGGATGTAATGTTTAATGCTGCATATTTTGCAGTAAATCTATGTGATAAGATGAACGGTTGCAGTAGTGCCGATCACACCTCATGCTTGCAAAGGATAATATTGGATTACTTTGCTGGAGTTGATAATATTGATTTCTGCAAGAAAATCAGTCAAAGCAGTCCTTTCCTGCGGGCAGATATAAAGGTATTTCTACAGAGCAATTCACATGCTTGTTTTACACCGAGAGCTGTTGCGAGAGTGATGCACGGAATTGCAAGCCCAGCCTACCCTTATACAATATGGGGTAAAACCCATTTCTGGGGAAGGTATACCAAGGTAGACTTTAAGGTGGTGATGGAAGCAGCAAAGGAAGAACTCAAAAATTTTATTGGAAAAGATATGCTCTAG 2838 0.4094 MAGTCCMNHHFPLFVLHLLLRSNNSDSKKMQFDSDSDSDGSHISSTPPRQPNPPPPPSPKPPLPVSNKKSKINTKPKPSKSNKLPSKPPETLPQQDPDPDPFPLASFSSLPFHIRQRTSEAASTSSSHSIETLPAGFFSKSISFSKIRKPLLNLEASENEPVVNSPKAVVKSAKKHPNLIGASAPTPIVKVLRGAGEGNFVKLNLNGKRKKFLNKGWNKKGKFGSGKRYRNGYSSYSGSRSKRKKLEAEGGDNEEDGLDEENAKQQEKRKGWENECKVLEEAVLAARNEASDENLVKLLKLIHGYDSFREGQLEAIQNVLAGKSTMLILPTGAGKSLCYQLSALILPGITLVVSPLIALMIDQLRQLPPLISGALLSSSQTLEESSETLSQVRQGTIKVLFVSPERFLNEEFLSVISAVSSVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKSLNVGSVLAMTATATTTTLDAIMSALDIPYTNLIQNAHLRDNLRLSVSLIKNRMKDLLVLIKSSPFTEVKSIIVYCKFQSDTDQISRYLNDNNIKAKSYHSGISAKERGYVQELFGSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDEMYFKLRSLMYSEGVDEYAVNKFMSEVFPADKSSCGKICSLIKESAARRFDMKEEVILTVLTRLELGDMQYLHLLPQTNVTCVLNFHMTPAVSLAQKVSAIAVILKRSENKHGQYIFDIPTVVNDMGVTPVELTDQLYDLKLKGEITYEMKDMAYCYRILEVPTDFFSLSDDITKWLSEVESCKVRKMDVMFNAAYFAVNLCDKMNGCSSADHTSCLQRIILDYFAGVDNIDFCKKISQSSPFLRADIKVFLQSNSHACFTPRAVARVMHGIASPAYPYTIWGKTHFWGRYTKVDFKVVMEAAKEELKNFIGKDML* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1326 945 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 486 IPR014001 -
Tpr3g1326 945 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 507 657 IPR001650 -
Tpr3g1326 945 Pfam DEAD/DEAH box helicase 311 472 IPR011545 GO:0003676|GO:0005524
Tpr3g1326 945 Pfam Helicase conserved C-terminal domain 522 617 IPR001650 -
Tpr3g1326 945 Gene3D - 278 485 IPR027417 -
Tpr3g1326 945 CDD SF2_C_RecQ 494 627 - -
Tpr3g1326 945 PANTHER ATP-DEPENDENT DNA HELICASE Q4 70 868 - -
Tpr3g1326 945 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 298 656 IPR004589 GO:0004386|GO:0006310
Tpr3g1326 945 MobiDBLite consensus disorder prediction 234 271 - -
Tpr3g1326 945 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 423 432 IPR002464 -
Tpr3g1326 945 Gene3D - 494 676 IPR027417 -
Tpr3g1326 945 SMART ultradead3 304 502 IPR014001 -
Tpr3g1326 945 MobiDBLite consensus disorder prediction 27 96 - -
Tpr3g1326 945 MobiDBLite consensus disorder prediction 47 64 - -
Tpr3g1326 945 PANTHER DNA HELICASE RECQ FAMILY MEMBER 70 868 - -
Tpr3g1326 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 630 IPR027417 -
Tpr3g1326 945 Coils Coil 255 289 - -
Tpr3g1326 945 MobiDBLite consensus disorder prediction 67 89 - -
Tpr3g1326 945 SMART helicmild6 537 618 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1326 Tpr-Chr3 11743718 11752076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1326 523 650 Eukaryotic Initiation Factors Gene Family AT3G19760 30.000 1.42e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1326 K10730 - gmx:100811214 1187.94