LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g1311	ATGGTTAAGTACTCAAGAGAACCTGATAATCCCACCAAGTCTACTAAGGCACGAGGTGCAGATCTTAGAGTTCATTTCAAGAACACTAGGGAAACTGCGTTTGCAATCAGGAAGTTGCCCTTGATCAAGGCCAAAAGGTACCTGGAAGACGTTCTTGCACACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTAGGAAGGACTGCCCAGGCCAAGAATAGGCACTCTAATGGACAAGGAAGGTGGCCTGCCAAGTCTGCAAAGTTCATCCTTGACTTACTCAAGAATGCTGAGAGCAACGCAGAAGTGAAAGGTTTGGATGTTGATGCCCTATATGTTTCACATATCCAAGTCAATCAAGCACAGAAGCAAAGACGCCGAACATACAGAGCCCATGGAAGAATCAACCCTTACATGTCATCTCCATGCCACATTGAGTTGATTTTATCTGAAAAGGAAGAGGCTGTCAGGAAGGAGCCTGAGTCCCAGTTGGCAACCAGCAAGAAGGCTTAA	519	0.4624	MVKYSREPDNPTKSTKARGADLRVHFKNTRETAFAIRKLPLIKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEAVRKEPESQLATSKKA*	173

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g1311	172	CDD	Ribosomal_L22	16	151	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Tpr3g1311	172	PANTHER	60S RIBOSOMAL PROTEIN L17-1 ISOFORM X1	1	170	-	-
	Tpr3g1311	172	SUPERFAMILY	Ribosomal protein L22	1	154	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Tpr3g1311	172	Pfam	Ribosomal protein L22p/L17e	17	152	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Tpr3g1311	172	Gene3D	Ribosomal protein L22/L17	1	172	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Tpr3g1311	172	PANTHER	60S RIBOSOMAL PROTEIN L17	1	170	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Tpr3g1311	172	ProSitePatterns	Ribosomal protein L22 signature.	127	151	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Tpr3g1311	172	Hamap	50S ribosomal protein L22 [rplV].	2	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Tpr3g1311	172	TIGRFAM	uL22_arch_euk: ribosomal protein uL22	4	154	IPR005721	GO:0003735\|GO:0006412\|GO:0015934

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g1311	Tpr-Chr3	11606793	11610005	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g1311	1	171	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	88.889	1.26e-114	321

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g1311	K02880		-	gmx:100499784	333.569

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr3g1311	3	11606793	11610005	Tpr3g1311	3	11606793	11610005	ECH
	Tpr2g4678	2	52090331	52092317	Tpr3g1311	3	11606793	11610005	PCT