Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1304 ATGGATTGGAATGCAAAATCTCCCTCTTCAGGGTGGGGGTTGGATCACCTATCATTTTTCAATGCAAAAGCAACTGAAAGTCCGAAATTTCAACCACCAAACTGGCTGATCGAATTAGACCGAGAAAACAATGTTGGGCTGTTCGATACGCCTGGTGGAAGTGGTTGTTGTGGCTCTGAGCTAATTCTCGGTTCTACGTCAAGGAGTTCAAAATCAGCTTCAATTGGTTCATCATTAAATAGGGACAGTGAAACCAAAGAATATCCGATGGAAAGTTCTCATGCACCGGAGCTTTCTTCTGTCTCTGGTGAACCATTGCTCACTCTAAGACTCGGTAAAAGAATGTACTCCGAGGATGTATGTCCCGAAAGTGATGCCGAATACCTATCTTTTTCGAGGGATCTCATGTCATCTTTAAGTGTTGGAAAGAAATTGAAGTCCAATGGTCAGAACTTAAAAACTCCGCGCTGCCAGGTTGAAGGTTGTGGCCTTGACCTTTCATCGGCTAAAAAATATCATCGCAGCCATAACATTTGTGAAATTCATTCCAAATCTCGTATGGTGGTTGTAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGATCTGTTTGAATTCGATGAAGAAAAGAGAAGCTGCAGACGACGTCTTGCACATCACAATGCAAGGCGTCGTAAACATGGTCCTCTTGATGCTGTCCAGTCAAGTCGATCAGCCTCACGACGTGCAGGGAAGCAACAGATGAATCCATTGGCTCATTCAAAGACTGATAGAAATTTAGCCTTGCAAAACATACCTAACAGCAAACTCCCTCAAACAAAAGATTTTCTCTTGAAGCCTTCAAAATACAACAATGACATACCAAGTTCCCTCGCTATGCTTTCTGCTGATTCCGATGTCCATTTTACATGCAAAGCGCTCGAAACCAAGAGTACCAGTCCAGACATAGACGATTTTCTTGACTTTTCTGATACAAATGCTACACAAGACTTTACTTGTGCTCTCTCTCTTCTGTCAACCATTTCTCTAGAACATTCTAATCACACTACCATTAATCCTGAAGCCGTAACACATGCAATGAATCTGCGCATGCCTCTTGCTTCATCAGAATCATGGTGTGGTGATGATGATCAACATGTGAATTCCAGTATGTGGAGCTCAAACTGTGAAGATGGCAGTCACTTTCAAGAATTTAAACTGTTCAGAGGACCTTATGAGTCTGGTTTTCATCACCAGATGGATTAA 1257 0.4248 MDWNAKSPSSGWGLDHLSFFNAKATESPKFQPPNWLIELDRENNVGLFDTPGGSGCCGSELILGSTSRSSKSASIGSSLNRDSETKEYPMESSHAPELSSVSGEPLLTLRLGKRMYSEDVCPESDAEYLSFSRDLMSSLSVGKKLKSNGQNLKTPRCQVEGCGLDLSSAKKYHRSHNICEIHSKSRMVVVAGLERRFCQQCSRFHDLFEFDEEKRSCRRRLAHHNARRRKHGPLDAVQSSRSASRRAGKQQMNPLAHSKTDRNLALQNIPNSKLPQTKDFLLKPSKYNNDIPSSLAMLSADSDVHFTCKALETKSTSPDIDDFLDFSDTNATQDFTCALSLLSTISLEHSNHTTINPEAVTHAMNLRMPLASSESWCGDDDQHVNSSMWSSNCEDGSHFQEFKLFRGPYESGFHHQMD* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1304 418 Gene3D - 148 218 IPR036893 GO:0003677|GO:0005634
Tpr3g1304 418 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 415 IPR044817 GO:0003677
Tpr3g1304 418 MobiDBLite consensus disorder prediction 223 261 - -
Tpr3g1304 418 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
Tpr3g1304 418 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 19 415 - -
Tpr3g1304 418 SUPERFAMILY SBT domain 155 232 IPR036893 GO:0003677|GO:0005634
Tpr3g1304 418 MobiDBLite consensus disorder prediction 237 261 - -
Tpr3g1304 418 MobiDBLite consensus disorder prediction 73 99 - -
Tpr3g1304 418 Pfam SBP domain 157 230 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1304 Tpr-Chr3 11503273 11507282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1304 90 346 SBP-box Gene Family AT1G27370 39.706 4.57e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr3g1304 SBP 4.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1304 - - mtr:MTR_8g080670 425.246