Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1295 ATGGGAAGAGGAAGAGTTGAGTTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTCGCTAAACGTAGAAACGGGATTTTGAAAAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAATAGAGGAAAATTGTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTATCAGAAATGTAACTATGGTGCACCTGAGACTAATGTATCTGCAAGAGAAGCCTTGGAGTTAAGCAGTCAACAGGAATATTTGAAGCTGAAAGCACGTTCTGAAGCATTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTTAGCAGTAAAGAGCTAGAGACACTTGAAAGGCAGCTAGATTCGTCCTTGAAGAAAATAAGATCAACAAGGACCCAATTCATGCTGGACCAGCTCTCTGATCTTCAACGCAAGGAACATATGCTAAGTGAGGCTAACAGGTCCCTCAGACAAAGGCAGTTGGAAGGGTATCAATTAAATCAACTCCAAATGAATGCTTGTGTTGAAGAAATGAGCTATGGTCGGCATCCACATCCAAGTCAAACTCATCAGGGTGATGGCCTTTATCAACAACTTGAGTGTGAGCCAACATTACAAATTGGTTACCAGGCCGATCCAGGGTCAGTGGTTACAGCAGGCCCAAGCATGAGTAATTACATGGGGGGATGGTTACCATAG 738 0.4322 MGRGRVELKRIENKINRQVTFAKRRNGILKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSAREALELSSQQEYLKLKARSEALQRSQRNLMGEDLGPLSSKELETLERQLDSSLKKIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRQLEGYQLNQLQMNACVEEMSYGRHPHPSQTHQGDGLYQQLECEPTLQIGYQADPGSVVTAGPSMSNYMGGWLP* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1295 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Tpr3g1295 245 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g1295 245 Coils Coil 126 146 - -
Tpr3g1295 245 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g1295 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tpr3g1295 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1295 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1295 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1295 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g1295 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g1295 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1295 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1295 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Tpr3g1295 245 Coils Coil 152 172 - -
Tpr3g1295 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Tpr3g1295 245 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1295 Tpr-Chr3 11455322 11462625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1295 1 245 MADS-box Gene Family AT1G24260 70.445 1.62e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr3g1295 K-box 2.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1295 - - gmx:100805078 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1295 3 11455322 11462625 Tpr3g1295 3 11455322 11462625 ECH
Tpr2g4647 2 51739989 51743941 Tpr3g1295 3 11455322 11462625 PCT