Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1294 ATGGGAAGAGGAAGAGTTGAGTTGAAGAGAATTGAGAACAAAATCAACAGACAAGTTACCTTCGCTAAACGTAGAAACGGGCTTTTGAAAAAAGCTTATGAGCTTTCTGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCAATAGAGGAAAATTGTATGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACGCTAGAGAGGTATCAGAAATGTAACTATGGTGCACCTGAGACTAATGTATCTGCAAGAGAAGCCTTGGAGTTAAGCAGTCAACAGGAATATTTGAAGCTGAAAGCACGTTATGAAGCATTACAACGGTCCCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTTAGCAGTAAAGAGCTAGAGACACTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGACCCAATTCATGCTGGACCAGCTCTCTGATCTTCAACGCAAGGAACATATGCTAAGTGAGGCTAACAGGTCCCTCAGACAAAGGCAGTTGGAAGGGTATCAATTAAATCAACTCCAAATGAATGCTTGTGTTGAAGAAATGAGCTATGGTCGGCATCCACATCCAAGTCAAACTCATCAGGGTGATGGCCTTTATCAACAACTTGAGTGTGAGCCAACATTACAAATTGGTTATCAGGCCGATCCAGGGTCAGTGGTTACAGCAGGCCCAAGCATGAGTAATTACATGGGGGGATGGTTACCATAG 738 0.4309 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSAREALELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELETLERQLDSSLKQIRSTRTQFMLDQLSDLQRKEHMLSEANRSLRQRQLEGYQLNQLQMNACVEEMSYGRHPHPSQTHQGDGLYQQLECEPTLQIGYQADPGSVVTAGPSMSNYMGGWLP* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1294 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g1294 245 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Tpr3g1294 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1294 245 Coils Coil 126 146 - -
Tpr3g1294 245 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Tpr3g1294 245 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Tpr3g1294 245 Pfam K-box region 91 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g1294 245 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Tpr3g1294 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1294 245 Coils Coil 152 172 - -
Tpr3g1294 245 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tpr3g1294 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Tpr3g1294 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1294 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1294 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g1294 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1294 Tpr-Chr3 11449292 11454840 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1294 1 245 MADS-box Gene Family AT1G24260 71.660 1.37e-115 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tpr3g1294 K-box 3.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1294 - - gmx:100805078 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1294 3 11449292 11454840 Tpr2g4647 2 51739989 51743941 PCT