Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1288 ATGAGGATCTCATTTGACCAAGTGCATGCTCATGCATCCGTGTGTCAGGTTGTTCCAATATACCAGACCCTAGCCAAATGGCTCCCTCACCCAGAAAAGGTTCTGTTTTTGTTTTTTGTTGTTGTATTGTATATCATGGGAGCACTTAGCCCATACTACAACTATAATTGTTACCCTTATGAACCTCATCAAACTAACAACAACTCAGAACTCATCACTTTTCAACATCATGAACAACAACAACAACAACAATCATCATTACCTCAATTATCACAAATTTCAGAACATAATAATAACCACCATTTTTCTTCTTACTTAGATGAAACCTTGTTTTTTCAAAGTCCATATTTTTACTCAAATGAGACTTACCCTTCTCATGAACAACTACTTATTGACACCACTTTCTCTTCTCAAAATGATGGCTTCATTTCAATGAATGAAATTTTCTCAAATGAACAAGATTTCAATTTCAACACCTACCTTCCAAAACGACAAAAGCTATGTTATGAGGAGAAAAAAGTGCAACAACAAGAAGAAGAGCTTTTGAACTCAACCAATTTTTTTGTGGATGAGTTTATTACTAACCCTTTTGTTTCCTTTGAAGCAGAACCACAATTTTATGGTTCTGCTTCAAAAATTGTTGATGTTGTTGGTTGTGAGAAGAAAGTGAACGAAAAGACTATCTCTCCCCAGAGTATTGCGGCGAGAGAAAGAAGAAGAAAGATAACTGAGAAGACACAAGAGCTTGGGAAGTTAGTTCCTGGTGGTTCTAAGATGAACACAGCAGAGATGTTTAATGCTGCTGCTAATTATGTTAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAAGTTATGGGAACATTAAGCAAGGAAGAAAAGGAACCTCCTCCAAGTAAAGATCTACACAATCTACTTGTTTCTCCTTTTGTTCAAGAGAAGTTGTATTTGGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCACATTAACCAATCATGATGATGTTAGATCAAAACCTACCATCCTTAAGGGCCTTAAGCAGCTTATTGGAACAGAGATTAATGAGAAGAAACCAAAGCAAGAATAA 1089 0.36 MRISFDQVHAHASVCQVVPIYQTLAKWLPHPEKVLFLFFVVVLYIMGALSPYYNYNCYPYEPHQTNNNSELITFQHHEQQQQQQSSLPQLSQISEHNNNHHFSSYLDETLFFQSPYFYSNETYPSHEQLLIDTTFSSQNDGFISMNEIFSNEQDFNFNTYLPKRQKLCYEEKKVQQQEEELLNSTNFFVDEFITNPFVSFEAEPQFYGSASKIVDVVGCEKKVNEKTISPQSIAARERRRKITEKTQELGKLVPGGSKMNTAEMFNAAANYVKFLQAQVGMLQVMGTLSKEEKEPPPSKDLHNLLVSPFVQEKLYLEEKCFVPKEFVTTLTNHDDVRSKPTILKGLKQLIGTEINEKKPKQE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1288 362 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 284 IPR036638 GO:0046983
Tpr3g1288 362 SMART finulus 232 281 IPR011598 GO:0046983
Tpr3g1288 362 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 275 IPR011598 GO:0046983
Tpr3g1288 362 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 48 347 - -
Tpr3g1288 362 Pfam Helix-loop-helix DNA-binding domain 234 276 IPR011598 GO:0046983
Tpr3g1288 362 PANTHER TRANSCRIPTION FACTOR BHLH52-RELATED 48 347 - -
Tpr3g1288 362 Gene3D - 226 294 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1288 Tpr-Chr3 11394626 11397632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1288 185 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 43.605 5.64e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr3g1288 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1288 - - mtr:MTR_1g060700 418.698