Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1275 ATGCACAACCAAGATCAAACAATATCTCACGCTCCAGGGCACGAAAATCATGGAGTTTATGTGTGTAACAAATGTGGATGGCCATTCCCAAATCCACATCCTAGTGCTAAACACAGACGTTCTCACAAGAAGATCTGTGGAACCATTCATGGTTACAAACACCAACAAACAACACCAGGTTTGGTTGTGTCTGGTTCAAATAATGAGAACCATGGAATTGAAGGGAAATTAATTAGGTCAGAAAGTGAGGTCTATTCAGATGCAGCTACTGATTTTTCAGATAATGGATTAAGTCCAGGAGTTAAGCCTATTTTGCAACAAGGAGATAATTTGGATTCTGGCATTGATTTGGAAAGAGTCAACAATACAAAGGAACATACCCTTTTAGGGTCTTCCGAGGACAATGACTTTAATGCTGCAGATGAGAGTCTATCGATTGCCAACTCAAGCAATGACTGCCAAATTCAAAATCCAAAAATCCCACCATCTGAAAGTTTTGAAGTTGGAAATACAGTTGGGTCGCAAGGTCAATTTTCAGTCTCTACTGTGGATTCATTAACAAGCTCAATTGCAGATTCGAAGACTGAAGGATCGAGTATTGTGCATGGTGATGGTTTTTCTGGTTTGTCAAGTGACTCAAGTCTCAGCAAAGCTGAAGCTGTGCCCGAAGTATTGTCAGAAAAAAATATCTATGCTGTTGAAAATGTGACAGATTCTAGTTTGATATGTGATGAAAAGGAGTCTAATTTGAAACGAAGCAATGAGGTAAAATCAGAAAGAGACATGGTTGAAATTGTGGAGTCAACCGATAGCATTGTAAATGATGGAGCTGTTAATCCAATGGAAAATAAGGGATCCGAGTTTGTTTCTTTGCTGCCCCAAAATGAACTTCCTCAAGAAATAAACTCGTCTATAATCACAAACGATACTCAGTTAGAATCTGCACATGCAATACAGTCTACTACTTGCAGTGATGTCAAGGTTTCACAGGAAAAGGAAGACATGAATGTTAATATTGATCCACTTCCTGTGCATGATGATAAACTTGATGTAGCCTATTCTCAGAGTGAGTCATTGAAACCCGAGGAAGATGTTACCAATGGAAATGATTTTCATTTCAACACAAGCCAACTGAGTGAAAGGAGTCATGTCATTTCTTCAGATGTGCGAATTTTGGATGGTAAAATGAAGGCGGATTCTGAAGATTGCTCTGAAGTTTCGTTGGTTGAGCTCACAACCGAAACTTATCAAAGATCGCATGAAATTGGAGTGTCTATGAAACCTGAGGTGAATGAGAATCATTTTTCTGAAGAGGATGGGCCTGGTGACATTGATGAAAATTCTCAACCCGAAAGTAGTTTAATGGTTTCGCCAAATGAATATCAGAGGGAGACATCCTTTCAGTCTGCGACTGACGACACATTCAACATAATCAATAATGACACAGCTGAAATAAATGATGTATCAGTAGATGGAAATATTGTAGGAGCTAATGTGGAAAATGACACTGAAGTTATAGTGAAAGATCTCCAACCTAGTGACCTCTTGCAACCAGAAGTTGAGCAATCAAGTGACTTATTTAGGAATAATAGCGATGATGCTGGTGAAACTGGTAAAATTGAAGGTGAAATCAATAGCAATATCAAATTGTCTGAAGAACATAACAAATCCACTGGTATTGCTGCTGACTCGCATGAAGAACAAGATGCACAACTATCAGTGACTGCTGCGGAAGACTCGCATGAAGAACAAGATGCACAACTATCGGTGAATGCTGTGGGAGACTTGCATGAAGAACAAGATGCACAACTATCAGTGAATGCTGCGGAAGACTCACATGAAGAACAAGATGCACAACTATCAGTGAATGCTGCGGAAAACTTTTCCAGCAAGCATACACCACATTCTTCGACAAATACCGTTTCTTCTGTGCAACTCGATTCTGCTGTTGAAGATGATACTACTGGAGAGCCTGTTCAAGATCAAAGCAATAATAACTTGGTTAAACTTGGTTCATCTGGAATTGATACTTCTGCTGACTCACTTGAAGCGCGAGATGCACAACTATTAGTGAAGGCTATAGAAGACCTTGCGAGCAAGTATACATCAAATTCTTTTATAAATGCTGAGACTTCTGCCGTTGAAGATAATTCAGATGAAGTGACTAGAGTTACTGCTGTGCCACTGCCTGTTCAAGATCAAGGAGTTAATAATTTGACTAAACTAACTTCACCTGGAACCGAGGCTTCGGTTGACTCTGGTAGCCGGCGCGACAGTTTGGATGGTAACTGGGGCTCTAGTTCAGTTATCTCGATGATATCTGATGCACCAACTGTTCTTGATGGAGAAACCTTACCATCAACCGGTCCGCAGGCATTGACAGAAGCAAGCAAATCAGATGTGAACATCCCACAGGCTGCACCTGCTGATAGACAGCTATCTGGAAAATCAGAAATGTTTGAGCTGCCATCTTTCACGACATTGGTTGAGCCAAGCCATGTGGCGGACGGTGCCGCAGCGGCTTCTGAAATCCAGAACCCACAACAGTCAAATTCCACCTCACAAGCTGCTTGGTTTCCAACTCTAAATCAGGTTATCAATGAGCCTCAAGGCAGAAAGAAGAACGAAGAAACAATCAGCAAGATAACAAAACGAAGCAGCAGTAAAGAACACACACCTTTGAAGAGTCTCTTGGGTGAGGCCACTCATAGCAGCAGCAAGCCAAAATCACCAAAAATAGAAGAAAATAATAAAGGTTCTGGATTGACAACTGTTAACTCTATTCTTGGTCCTGAGTCCCCTTCGGCAGCTCAAACGGAGAAAGAAAAGGCTGCAAATGAATGGAACTCTCCAGCAAGATATCCTGCAAACATCAAGAGAGAAAAAAAGAAATTGAAGAGCAGACCATTTTGGATACAGTTGGTTTGTTGCTCAACAGTGGATCCTCAGCGACGGTAG 2958 0.4101 MHNQDQTISHAPGHENHGVYVCNKCGWPFPNPHPSAKHRRSHKKICGTIHGYKHQQTTPGLVVSGSNNENHGIEGKLIRSESEVYSDAATDFSDNGLSPGVKPILQQGDNLDSGIDLERVNNTKEHTLLGSSEDNDFNAADESLSIANSSNDCQIQNPKIPPSESFEVGNTVGSQGQFSVSTVDSLTSSIADSKTEGSSIVHGDGFSGLSSDSSLSKAEAVPEVLSEKNIYAVENVTDSSLICDEKESNLKRSNEVKSERDMVEIVESTDSIVNDGAVNPMENKGSEFVSLLPQNELPQEINSSIITNDTQLESAHAIQSTTCSDVKVSQEKEDMNVNIDPLPVHDDKLDVAYSQSESLKPEEDVTNGNDFHFNTSQLSERSHVISSDVRILDGKMKADSEDCSEVSLVELTTETYQRSHEIGVSMKPEVNENHFSEEDGPGDIDENSQPESSLMVSPNEYQRETSFQSATDDTFNIINNDTAEINDVSVDGNIVGANVENDTEVIVKDLQPSDLLQPEVEQSSDLFRNNSDDAGETGKIEGEINSNIKLSEEHNKSTGIAADSHEEQDAQLSVTAAEDSHEEQDAQLSVNAVGDLHEEQDAQLSVNAAEDSHEEQDAQLSVNAAENFSSKHTPHSSTNTVSSVQLDSAVEDDTTGEPVQDQSNNNLVKLGSSGIDTSADSLEARDAQLLVKAIEDLASKYTSNSFINAETSAVEDNSDEVTRVTAVPLPVQDQGVNNLTKLTSPGTEASVDSGSRRDSLDGNWGSSSVISMISDAPTVLDGETLPSTGPQALTEASKSDVNIPQAAPADRQLSGKSEMFELPSFTTLVEPSHVADGAAAASEIQNPQQSNSTSQAAWFPTLNQVINEPQGRKKNEETISKITKRSSSKEHTPLKSLLGEATHSSSKPKSPKIEENNKGSGLTTVNSILGPESPSAAQTEKEKAANEWNSPARYPANIKREKKKLKSRPFWIQLVCCSTVDPQRR* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1275 985 ProSiteProfiles Zinc finger C2H2 type domain profile. 20 42 IPR013087 -
Tpr3g1275 985 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 709 980 - -
Tpr3g1275 985 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 682 - -
Tpr3g1275 985 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 1 682 - -
Tpr3g1275 985 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 709 980 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 516 531 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 513 586 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 546 563 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 742 763 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 793 816 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 916 945 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 870 891 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 437 456 - -
Tpr3g1275 985 MobiDBLite consensus disorder prediction 864 965 - -
Tpr3g1275 985 ProSitePatterns Zinc finger C2H2 type domain signature. 22 42 IPR013087 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g1275 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1275 - - mtr:MTR_8g081010 1226.85