Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1260 ATGCAAATCTTTGTTAAGGCGCTTACAGGCAAGACCGTTACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCCAAGATTCAAGATAAGGAAGGGATCCCATCAGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTTCGTGGTGGTATGCAAATCTTTGTGAAGACTCTCACCGGAAAGACCGTCACCCTGGAGGTTGAGAGTTCGGATACGATAGAAAATGTCAAGGTCAAGATTCAAGACAAGGAAGGTATTCCACCAGACCAGCAAAGGCTGATTTTTGCTGGAAAACAGCTTGAGGATGGCAGGACATTAGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTTAAGACGCTTACAGGCAAAACGATTACTTTGGAGGTTGAGAGCTCAGATACGATTGACAATGTTAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCAAAGGCTGATTTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTTAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCAGACACGATTGACAATGTAAAGGCCAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCAGCAAAGGCTGATTTTTGCCGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTTAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCAGACACGATTGACAATGTAAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAGCAAAGGCTTATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTTAAGACGCTTACAGGCAAGACCATTACTTTGGAGGTAGAAAGCTCAGACACAATTGACAATGTGAAGGCCAAGATACAAGACAAGGAGGGTATTCCTCCAGACCAGCAAAGGTTGATTTTTGCCGGAAAGCAGCTGGAAGATGGTCGAACCTTGGCCGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGCATGCAAATCTTTGTAAAGACATTGACAGGCAAGACCATTACTTTGGAGGTAGAGAGCTCAGACACAATTGACAATGTGAAGGCTAAGATACAAGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGACTATAACATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCAGACACTATTGACAATGTGAAGACCAAGATACAGGACAAAGAAGGTATTCCCCCAGACCAGCAAAGGTTGATATTTGCTGGAAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTATAATATTCAGAAAGAGTCCACGCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAAATCTTTGTGAAGACGCTGACCGGAAAGACCATTACCTTGGAGGTAGAAAGTTCAGACACAATTGATAATGTGAAGTCAAAAATACAGGATAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGTAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCATCTTGTTTTGCGCCTTCGCGGTGGATTTTAA 2058 0.4587 MQIFVKALTGKTVTLEVESSDTIDNVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTVTLEVESSDTIENVKVKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 609 684 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 1 72 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 153 224 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 533 604 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 77 148 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 229 300 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 457 528 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 381 452 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 305 376 IPR000626 GO:0005515
Tpr3g1260 685 SMART ubq_7 609 680 IPR000626 GO:0005515
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Tpr3g1260 685 CDD Ubl_ubiquitin 457 532 - -
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 407 432 IPR019954 -
Tpr3g1260 685 CDD Ubl_ubiquitin 609 684 - -
Tpr3g1260 685 CDD Ubl_ubiquitin 77 152 - -
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 457 532 IPR000626 GO:0005515
Tpr3g1260 685 Gene3D - 457 532 - -
Tpr3g1260 685 Gene3D - 381 456 - -
Tpr3g1260 685 Gene3D - 154 228 - -
Tpr3g1260 685 Gene3D - 305 380 - -
Tpr3g1260 685 Gene3D - 533 609 - -
Tpr3g1260 685 Gene3D - 1 76 - -
Tpr3g1260 685 Gene3D - 229 304 - -
Tpr3g1260 685 Gene3D - 610 685 - -
Tpr3g1260 685 Gene3D - 77 153 - -
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 559 584 IPR019954 -
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 381 456 IPR000626 GO:0005515
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Tpr3g1260 685 PANTHER UBIQUITIN 435 663 - -
Tpr3g1260 685 PANTHER UBIQUITIN 1 207 - -
Tpr3g1260 685 PANTHER UBIQUITIN 305 511 - -
Tpr3g1260 685 PANTHER UBIQUITIN 152 359 - -
Tpr3g1260 685 PANTHER UBIQUITIN 207 435 - -
Tpr3g1260 685 PANTHER UBIQUITIN 76 283 - -
Tpr3g1260 685 PANTHER UBIQUITIN 361 587 - -
Tpr3g1260 685 PANTHER UBIQUITIN 608 684 - -
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 379 456 IPR029071 -
Tpr3g1260 685 CDD Ubl_ubiquitin 229 304 - -
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 305 380 IPR000626 GO:0005515
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 533 608 IPR000626 GO:0005515
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 331 356 IPR019954 -
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 227 304 IPR029071 -
Tpr3g1260 685 PRINTS Ubiquitin signature 163 183 IPR019956 -
Tpr3g1260 685 PRINTS Ubiquitin signature 184 204 IPR019956 -
Tpr3g1260 685 PRINTS Ubiquitin signature 205 226 IPR019956 -
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Tpr3g1260 685 CDD Ubl_ubiquitin 381 456 - -
Tpr3g1260 685 CDD Ubl_ubiquitin 533 608 - -
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 608 684 IPR029071 -
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 483 508 IPR019954 -
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 532 608 IPR029071 -
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Tpr3g1260 685 CDD Ubl_ubiquitin 1 76 - -
Tpr3g1260 685 CDD Ubl_ubiquitin 153 228 - -
Tpr3g1260 685 Pfam Ubiquitin family 383 454 IPR000626 GO:0005515
Tpr3g1260 685 Pfam Ubiquitin family 307 378 IPR000626 GO:0005515
Tpr3g1260 685 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Tpr3g1260 685 Pfam Ubiquitin family 611 682 IPR000626 GO:0005515
Tpr3g1260 685 Pfam Ubiquitin family 231 302 IPR000626 GO:0005515
Tpr3g1260 685 Pfam Ubiquitin family 535 606 IPR000626 GO:0005515
Tpr3g1260 685 Pfam Ubiquitin family 459 530 IPR000626 GO:0005515
Tpr3g1260 685 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Tpr3g1260 685 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 304 380 IPR029071 -
Tpr3g1260 685 PANTHER UBIQUITIN 13 1 207 - -
Tpr3g1260 685 PANTHER UBIQUITIN 13 76 283 - -
Tpr3g1260 685 PANTHER UBIQUITIN 13 435 663 - -
Tpr3g1260 685 PANTHER UBIQUITIN 13 207 435 - -
Tpr3g1260 685 PANTHER UBIQUITIN 13 305 511 - -
Tpr3g1260 685 PANTHER UBIQUITIN 13 152 359 - -
Tpr3g1260 685 PANTHER UBIQUITIN 13 608 684 - -
Tpr3g1260 685 PANTHER UBIQUITIN 13 361 587 - -
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 255 280 IPR019954 -
Tpr3g1260 685 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Tpr3g1260 685 SUPERFAMILY Ubiquitin-like 456 532 IPR029071 -
Tpr3g1260 685 ProSitePatterns Ubiquitin domain signature. 635 660 IPR019954 -
Tpr3g1260 685 CDD Ubl_ubiquitin 305 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1260 Tpr-Chr3 11224576 11227614 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1260 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 94.805 1.35e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1260 K08770 - csin:114305206 1309.28