Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1252 ATGGGTCGTCGCAAAATTGAGATTGAGTCGGTGAAAAATCCCAACACAAGGCAGGTCACATTCTCAAAGCGTCGATCGGGTTTATTCAAAAAAGCAAATGAATTGTCTATTTTATGTGGAGCAGAAGTTGCTATAGTCATGTTTTCTCCAGGGAATAAGCCGTACTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCGGCTAAATATCTTCAACAAGATCCTGAACCAAGTGACTCGGAAGGAGACCTTTCTTCTGATGCTTCCAACATGGACGAGTTGAATCTGGAACTTGATGAGGTGTTGGCCGAAATCCGTGAAGGTGAAAAGCAGACTGAGACTTATGATGAGATCCTGAAGCAAAATGAAGTGACAACACTCTCTGGTCTTGAAGAATTGAAAGATTTGTATAAAGAGTTTCAAGACAAGGTAAAGTTGCGTCTTAGTGATCTTGAGATATCAGAATGTATGATGCTTCTTGCTAAGGAGCCGGTGGTGGGGGTTAACACAAAATCTGCAAAAAGTGAATAA 528 0.4148 MGRRKIEIESVKNPNTRQVTFSKRRSGLFKKANELSILCGAEVAIVMFSPGNKPYSFGHPGVDVVAAKYLQQDPEPSDSEGDLSSDASNMDELNLELDEVLAEIREGEKQTETYDEILKQNEVTTLSGLEELKDLYKEFQDKVKLRLSDLEISECMMLLAKEPVVGVNTKSAKSE* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1252 175 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1252 175 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g1252 175 PANTHER MADS BOX PROTEIN 2 170 - -
Tpr3g1252 175 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1252 175 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1252 175 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g1252 175 Coils Coil 90 110 - -
Tpr3g1252 175 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Tpr3g1252 175 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Tpr3g1252 175 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 170 - -
Tpr3g1252 175 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Tpr3g1252 175 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1252 Tpr-Chr3 11191451 11191978 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1252 1 161 Type I MADS-box Gene Family AT2G34440 44.444 4.88e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g1252 SRF-TF 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1252 - - mtr:MTR_4g131030 246.514