Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1251 ATGGGTCGTCGTAAAATTGAGATTGAGATGGTGAGAAACTCAAACACAAGACAAGTCACATTCTCAAAGCGTCGAACAGGTCTATTCAAGAAAGCAAATGAATTATCTATTTTGAGTGGAGCAGAAGTAGCTATTGTCGTGTTTTCTCCAGGGAATAAGCCATACTCATTTGGTCACCCAGAAGTTGATGTTGTCGCGGCCAAGTATCTTCAACAAGATCCTGAATCAAGTGACTCCGAAGGAGACCCCTCTTTTGATGCTTCCAATATGAACGAGTTGAATCTAGAACTTGTAGAGGTATTGACCCAAATTCGTGAAGTTGAAAAGCAGACTGAGGCATATGATAAGATCCTAAAGCAAAATGACGTGACAACACTCTTTGACCTTGAAGAATTGATAAATTCATATAAAGAACTTCAAAATTGGGTGAAATTGAGACTTAGTGATCTCAAAATATCAGAATATTTGTTGCTTCTTGCTACAGAGCCAGTTGTTGGGGTTAAAGCAAAATCTACAAAAAAGAATAGAAGAAAAAGTTGA 540 0.3778 MGRRKIEIEMVRNSNTRQVTFSKRRTGLFKKANELSILSGAEVAIVVFSPGNKPYSFGHPEVDVVAAKYLQQDPESSDSEGDPSFDASNMNELNLELVEVLTQIREVEKQTEAYDKILKQNDVTTLFDLEELINSYKELQNWVKLRLSDLKISEYLLLLATEPVVGVKAKSTKKNRRKS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1251 179 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Tpr3g1251 179 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Tpr3g1251 179 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 171 - -
Tpr3g1251 179 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tpr3g1251 179 PANTHER MADS BOX PROTEIN 2 171 - -
Tpr3g1251 179 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tpr3g1251 179 Coils Coil 90 110 - -
Tpr3g1251 179 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tpr3g1251 179 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tpr3g1251 179 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tpr3g1251 179 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1251 Tpr-Chr3 11189253 11189792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1251 1 160 Type I MADS-box Gene Family AT2G34440 40.698 6.11e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g1251 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1251 - - mtr:MTR_1g054265 214.927