Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1243 ATGGCTGATCGGAGTTTGGCCGTTGTGAAACCGGTATGGATGAAACAAGCGGAGGAAGCGAAGATTAAGAGCGAGGCTGAGAAAGATGCGGCAGCTAAAGCCGCTTTTGAAGCCACTTTTAAGGGTTTGGTGAAAAGTCATGAGAAGAGGGCTGCTAATTCGGATAGTGATTCGGATGAATATGAGGACTTGTCTCATAAGCCCATTGGGCCTGTTGATCCTTCGAAGTGCACTGCTGCTGGCACTGGAATTGCAGGAGGAACTGCCTGTGCGGCTTCTTCGTTCTCTGTGGTGACTAAGGATGCTGACGAGAGGAAGGTTTCGACTGGGGGTGCTCAAATTAAGGTGAAAGTGACGCCAGGTTTGGGTGTTGGAGGGTCTGATCAAGAAGGGATTGTGAAGGATATGGGTGATGGGACTTATACGGTTACTTATGTGGTGCCTAAGAGAGGGAATTATATGGTCAATGTTGAATGTAATGGCAGGCCAATCAATGGCAGTCCCTTCCCTGTGTTTTTCAGTGCAGGTAATAGTAATGGAGGACTGCTGGGTTTAGCTCCTGCATCTTCCTATCCAAATATGATTAATCAAACTATGCCCAACATGCCAAATTACTCTGGCTCTGTCTCAGGGGCATTCCCAGGATTGTTGGGAATGATTCCAGGAATTATTGCTGGAACTTCTGGGGGTGCTATTTTGCCAGGAATTGGAGCCACACTTGGGGAAGTTTGTCGCGATTACTTGAATGGGCGCTGTGCAAAAGTTGATTGTAATTTGAATCACCCACCTCATAATTTGCTCATGACTGCCTTAGCTGCCACAACTTCAATGGGATCACTTAGCCAGGCTCCTATGGCACCTTCTGCTGCTGCAATGGCTGCCGCTCAGGCAATAGTTGCTGCCCAAGCCCTTCAAGCTCATGCAGCTCAGGTGCAAGCTCAGTCAGCAAAAGATTCCGCTGGTTCACCTGACCAAGCCAATAAGGAGGATGTGTTGAAGAAAACTCTTCAAGTTAGCAATCTTAGCCCACTTCTCACTGCGGAACAGCTAAAACAACTCTTTGGTTTCTGTGGCACTGTTGTTGAATGTACAATCACCGAGTCAAAGCATTTTGCTTATATAGAATACTCAAAACCTGAAGAAGCAACTGCTGCTATGGCATTGAACAACATTGATGTTGGGGGGCGTCCTTTGAATGTTGAAATGGCTAAATCACTTCCGCCGAAACCAACCGTGAATTCTTCACATGCTTCATCCTCTCTTCCTTTGATGATGCAGCAAGCTGTTGCCATGCAACAGATGCAATTCCAGCAAGCACTGATTATGCAGCAAACAATGACTGCACAGCAGGCTGCTAACCGAGCTGCAACCATGAAATCTGCCACAGATTTAGCAGCAGCACGAGCTTTAGAAATAAGTAAGAAATTGAATCCTGATGGACTTGAAAATGAAGAAAAAGAGCTGAAACAGAAATCCAGATCACCTTCTCCCGCTCCTGAAAGAGCACGATCAAAGTCAAGATCTCCTATCAATTACAGGAGAAGGAGGAAGTCTCGTTCATACTCACCTGCCCGCCATTCTAAGGTTCATCGGTCCAGGTCACCATTGAGGTTCCATCATCATCCAAGGTATGAAAGGGACTGGAGGTCGTATAGAGACAACAGGGAACATAGTGATAGGTTCAGACGACGGGATTCAGATAGATTTCTTGATAATCATTCATCTGGTTCGAGAAGAAACAGAAGTAGGAGTGTGAGCCCTCATTCAAGGAGATCTCCTGTTTCTCCAAAACGTCACGGAGGAAGTTCATCTCATAGAGGAAGGAAACAGTCTCGTGCTGATTCTGGTTCTCCAAGTAATCGCAGAGGAAGTAGGTCTTCTCCAAAGATTGATGAGAAAAAATTAAGAAACAGAAGGCGCTCGAGGTCAAGATCTTCAGATGATAAGCTTAACTTCTCAGACAAAAATGAAGAAGTCATACCTGAAAAATCCAAGCATAGAGAGCGAAGGCGGTCCAGGTCAGTATCTGTGGATGAGAAACCTCACAGGAGCCGATCTTCCCCAAGAAAGGTGGCTGAAAGCAGACCCATGCACAAGAATCGGTCCAGGTCAAAATCTGTGGACGATGATAAGCATCACTTGTCTGACAAACTGGATGAAAACAAAAATAGGAGGTCCGTATCTTCAGATGATAAGCTTAACTCCTTTGACAAAAACGAAGAAGTCATACCTGAAAAATCCAAACATCGAGAGCGAAGGCGGTCCAGGTCCATATCTGTGGGCGAGAAGCCTCAGAGGAGGCGATCATCCCCTAGAAAAGTGGATGAAAGCAGATCCAGGCACAGGAAGCGGTCTAGGTCAAAATCTGTGGATGATAAGCGTCGCTTGTCTGGGAAATTGGATGAGAACAGAAGTAGAAGATCAAGGCATAGTGATAAAAGACGCTCCAGATCAAGATCTTTGGAAAATAGGGATCGGACTGATGTCAGAGAGGATGGAAGCAAACATGAAAAGTCAAAACATCATGATAAAAAAGGTAACAGGTCAGAGTCTGATGAAGGGAAGCATCATTCTAAAGGTAAATCTGGTGAAAATAGAGATAAGAAGTCAAAGCATCGTGATAGAAGGCGTTCCAGGTCAATATCATCAGAAGGTAAGCATGACAAAGGAGGCACTTCGTCACATAGAGATGAGAATGATTTTGAACACAAAAGATTCAGGTCAAAGTCTCCTAATGCCAAACATCACTGCGGTGATGATTATGAAAATAAAGATGAAAGATCAGAGCACCAAGAGAAAACCTTGTCTAAATCAAAATCAGAAAATCGTCAGCAATATGATGGGAGTGGTTCTTCCCCTAAAAATTTCAAGCAGTACGAATCAAAAGGGAAAACAAAATTTGATTCTGGATCTGCAGACGTTAAGCACCATTTGAATGATGTAGAAAATGGTACCGGTGATGAAAATTCAAAACATCTTGACAAGGCCACACATGAACCAATTTTGCATGTGAAGGACTTAACAAGCCTGAATGGTAATGGAATGTTGATTTCTGAGAATGAGAACACAAAGTTAGATGGGTGGACTGAAAATGCTGGAGCTGATGATAACCCAGGGTGGAAATGTGTAGAAGAAGCGGGAAGTGGGAAATGCTAA 3156 0.4442 MADRSLAVVKPVWMKQAEEAKIKSEAEKDAAAKAAFEATFKGLVKSHEKRAANSDSDSDEYEDLSHKPIGPVDPSKCTAAGTGIAGGTACAASSFSVVTKDADERKVSTGGAQIKVKVTPGLGVGGSDQEGIVKDMGDGTYTVTYVVPKRGNYMVNVECNGRPINGSPFPVFFSAGNSNGGLLGLAPASSYPNMINQTMPNMPNYSGSVSGAFPGLLGMIPGIIAGTSGGAILPGIGATLGEVCRDYLNGRCAKVDCNLNHPPHNLLMTALAATTSMGSLSQAPMAPSAAAMAAAQAIVAAQALQAHAAQVQAQSAKDSAGSPDQANKEDVLKKTLQVSNLSPLLTAEQLKQLFGFCGTVVECTITESKHFAYIEYSKPEEATAAMALNNIDVGGRPLNVEMAKSLPPKPTVNSSHASSSLPLMMQQAVAMQQMQFQQALIMQQTMTAQQAANRAATMKSATDLAAARALEISKKLNPDGLENEEKELKQKSRSPSPAPERARSKSRSPINYRRRRKSRSYSPARHSKVHRSRSPLRFHHHPRYERDWRSYRDNREHSDRFRRRDSDRFLDNHSSGSRRNRSRSVSPHSRRSPVSPKRHGGSSSHRGRKQSRADSGSPSNRRGSRSSPKIDEKKLRNRRRSRSRSSDDKLNFSDKNEEVIPEKSKHRERRRSRSVSVDEKPHRSRSSPRKVAESRPMHKNRSRSKSVDDDKHHLSDKLDENKNRRSVSSDDKLNSFDKNEEVIPEKSKHRERRRSRSISVGEKPQRRRSSPRKVDESRSRHRKRSRSKSVDDKRRLSGKLDENRSRRSRHSDKRRSRSRSLENRDRTDVREDGSKHEKSKHHDKKGNRSESDEGKHHSKGKSGENRDKKSKHRDRRRSRSISSEGKHDKGGTSSHRDENDFEHKRFRSKSPNAKHHCGDDYENKDERSEHQEKTLSKSKSENRQQYDGSGSSPKNFKQYESKGKTKFDSGSADVKHHLNDVENGTGDENSKHLDKATHEPILHVKDLTSLNGNGMLISENENTKLDGWTENAGADDNPGWKCVEEAGSGKC* 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1243 1051 ProSiteProfiles Zinc finger C3H1-type profile. 243 264 IPR000571 GO:0046872
Tpr3g1243 1051 SUPERFAMILY E set domains 71 171 IPR014756 -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 46 69 - -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 755 776 - -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 508 538 - -
Tpr3g1243 1051 SMART rrm1_1 335 401 IPR000504 GO:0003723
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 579 599 - -
Tpr3g1243 1051 Gene3D - 294 416 IPR012677 -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 641 748 - -
Tpr3g1243 1051 Gene3D Immunoglobulins 71 178 IPR013783 -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 941 958 - -
Tpr3g1243 1051 Pfam Filamin/ABP280 repeat 71 169 IPR017868 -
Tpr3g1243 1051 ProSiteProfiles Filamin/ABP280 repeat profile. 69 173 IPR017868 -
Tpr3g1243 1051 Coils Coil 14 34 - -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 475 538 - -
Tpr3g1243 1051 CDD RRM_SF 336 401 - -
Tpr3g1243 1051 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 758 - -
Tpr3g1243 1051 PANTHER SPLICING REGULATORY GLUTAMINE/LYSINE-RICH PROTEIN 1 1 758 - -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 790 808 - -
Tpr3g1243 1051 SUPERFAMILY RNA-binding domain, RBD 333 411 IPR035979 GO:0003676
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 568 975 - -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 475 500 - -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 959 975 - -
Tpr3g1243 1051 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 398 IPR000504 GO:0003723
Tpr3g1243 1051 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 405 IPR000504 GO:0003723
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 815 869 - -
Tpr3g1243 1051 MobiDBLite consensus disorder prediction 877 940 - -
Tpr3g1243 1051 SMART flmn_3 73 176 IPR001298 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1243 321 404 Eukaryotic Initiation Factors Gene Family AT2G23350 35.556 7.51e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1243 - - cam:101491057 1493.79