Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tpr3g1231 | ATGGCCGGGGTTTCTCTCCAGTGCGGTGATTGTGGCGCTCTGTTGAAATCAGTAGAAGAAGCTCAAGAACACGCTGAACTCACTTCACACTCCAATTTCGCTGAATCCACAGAACCCGTTCTCAATCTCGTCTGCACCACTTGCTCCAAACCCTGCCGATCCAAAACCGAGAGTGATTTACACACTAAGAGAACAGGGCACACTGAGTTTGTTGATAAGACTTCGGAAACAGCGAAATCAATAAGTTTAGAGGTTCCTAAGGGGGGTTCAGAATCACAAGAGGGTGGAACTAGTGATCAAAATGAAGAATTGGTTGTTCCTGAAGTTGATAAGAAGTTGCTTGAGGAACTTGAATCAATGGGCTTTTCTACAGCTCGTGCAACAAGGGCACTTCACTTTTCCGGTAATGCTAGCCTCGAGGCTGCTGTAACTTGGATAGAAAACCATGAGAATACGCCTGACATAGATGAGATGCCCTTGGTACCTGCTGTCAGTAAAGCTCAAGCTTCCAAACCCTCTCTTACCCCAGAAGAAACAAATGCCATACTAAAGGAACTAAGGGAGAAAGCTCGTAAGAAGAAAGAAGAAGAAGAGAAGAGAATGGAGAGAGAAAGAGAAAAGGAGAGAATTCGAGTTGGCAAGGAGTTGCTTGAAGCAAAGAGGATTGAAGAAGACAATGAGAGAAAACGGTTGTTAGCTTTGAGAAAAGCAGAGAAAGAGGAAGAGAGAAGGGCTAGAGAGAAAATCAGGCAAAAGCTGGAAGAAGACAAGGCGGAAAGAAGGCGAAAACTTGGATTGCCTGCAGAGGAGCCTTCAACTGTCAAACCTTCAACTGTTGTAGAGGAGAAAAAGAGTTTCCTACCAATTAGACCTGCCACCAAAACCGAGCAAATGAGAGAGTGCTTGCGTTCTCTAAAGCAGAACCATAAGGAGGATGATGCCAGAGTGAAGAAAGCATTCCAAACTCTTCTAACTTATGTGGGGAATGTTGCCAGAAATCCCAATGAAGAAAAATTCAGGAAGATTCGTCTTAGTAACGCAGCTTTTCAGGAAAGAGTTGGTGCTTTGAAGGGAGGCATTGAATTCCTTGAAATCTGCGGGTTTGAGAAGATCGATGGTGGTGAAGTTTTGTTTTTGCCCAGGGACAAGGTTGATATTGCAGTCCTGAATTCAGCTGGATCTGAACTCGACTCTGCAATAAAGAATCCCTTTTTTGGAGTTCTTTAG | 1227 | 0.4417 | MAGVSLQCGDCGALLKSVEEAQEHAELTSHSNFAESTEPVLNLVCTTCSKPCRSKTESDLHTKRTGHTEFVDKTSETAKSISLEVPKGGSESQEGGTSDQNEELVVPEVDKKLLEELESMGFSTARATRALHFSGNASLEAAVTWIENHENTPDIDEMPLVPAVSKAQASKPSLTPEETNAILKELREKARKKKEEEEKRMEREREKERIRVGKELLEAKRIEEDNERKRLLALRKAEKEEERRAREKIRQKLEEDKAERRRKLGLPAEEPSTVKPSTVVEEKKSFLPIRPATKTEQMRECLRSLKQNHKEDDARVKKAFQTLLTYVGNVARNPNEEKFRKIRLSNAAFQERVGALKGGIEFLEICGFEKIDGGEVLFLPRDKVDIAVLNSAGSELDSAIKNPFFGVL* | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tpr3g1231 | 408 | Pfam | PUB domain | 315 | 385 | IPR018997 | - | |
| Tpr3g1231 | 408 | MobiDBLite | consensus disorder prediction | 256 | 281 | - | - | |
| Tpr3g1231 | 408 | SUPERFAMILY | UBA-like | 88 | 162 | IPR009060 | GO:0005515 | |
| Tpr3g1231 | 408 | PANTHER | F13M7.16 PROTEIN | 1 | 408 | - | - | |
| Tpr3g1231 | 408 | Coils | Coil | 222 | 259 | - | - | |
| Tpr3g1231 | 408 | CDD | UBA_PUB_plant | 108 | 156 | - | - | |
| Tpr3g1231 | 408 | SMART | PGNneu | 318 | 381 | - | - | |
| Tpr3g1231 | 408 | Pfam | UBA/TS-N domain | 114 | 146 | IPR015940 | - | |
| Tpr3g1231 | 408 | Coils | Coil | 179 | 211 | - | - | |
| Tpr3g1231 | 408 | Gene3D | - | 291 | 398 | - | - | |
| Tpr3g1231 | 408 | PANTHER | F13M7.16 PROTEIN | 1 | 408 | - | - | |
| Tpr3g1231 | 408 | SUPERFAMILY | PUG domain-like | 290 | 404 | IPR036339 | - | |
| Tpr3g1231 | 408 | CDD | PUB_UBA_plant | 302 | 408 | - | - | |
| Tpr3g1231 | 408 | Gene3D | - | 110 | 156 | - | - | |
| Tpr3g1231 | 408 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 108 | 149 | IPR015940 | - | |
| Tpr3g1231 | 408 | SMART | uba_6 | 110 | 148 | IPR015940 | - | |
| Tpr3g1231 | 408 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 30 | IPR013087 | - | |
| Tpr3g1231 | 408 | MobiDBLite | consensus disorder prediction | 73 | 104 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tpr3g1231 | Tpr-Chr3 | 10997713 | 11002348 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tpr3g1231 | 96 | 408 | C2H2 Transcription Factor Family | AT1G04850 | 76.582 | 1.45e-143 | 410 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tpr3g1231 | K24348 | - | gmx:100794687 | 598.971 |