Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1225 ATGGTTATGGAAGAAACAACAACAACAACCATCATCATGGAAGCAGTTTCAACTCTCACACCTTCCCACCTTACTCATCTTACAAACTCCATTCACTCATCCACCCGCCGCCACCACCACCGTCTCACTTTCCTCCTTTCTTCCCCATCCATCTTCTCTCTTACCCTTCATCACCTCCACAAACTCTCTCTCTCCCAAAAAACTCATCTCATTTCACGCCACCTTCTTTCCTCTCTACACCTCCTAACCCAATCAACCTCACCGCTTCCACCTCCTATCTCAACAACCATGAGACAACGTGAAATCGACGCAGTCTTGCTCCTTCTTCTCCTCTGCGAAACACATAACCACAACCCAGAAGCTCTAAACGCACCGTTTTCTCATTGGAGATTGAATTTGAACAAAATCTTCTCCAACACATTATTGATCATGTCGTCTTGTTCTTCTGCACCACCGCTTGGAGGGTGTTTGGGGTCTGTTTTGATTCCGTTTATCGAGACAGTGAGCCGGTGTTGGAGATTGGTGGGTGTTTTGGATTGTGAAGAAGGGAAAGAAGTTAAAGAGGTGGCAGCTTCGGCGGCGACGGTTGTTTCTTTGCCGGCGGTGGTGGTGAGTGTGGGCGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGACGTGTGTCAGTTGCCATGTCAGCATTTGTTTCATTGGATGTGTATTTTGCCGTGGCTGGGTAACAAAAACACCTGTCCTTGCTGCAGGTTCCGGTTACCGTCCGATGATGTTTTTGGAGAGATCCAACGGCTTTGGGAAATCTTGCTTAAAATGGGTGCTGGCTAG 834 0.4796 MVMEETTTTTIIMEAVSTLTPSHLTHLTNSIHSSTRRHHHRLTFLLSSPSIFSLTLHHLHKLSLSQKTHLISRHLLSSLHLLTQSTSPLPPPISTTMRQREIDAVLLLLLLCETHNHNPEALNAPFSHWRLNLNKIFSNTLLIMSSCSSAPPLGGCLGSVLIPFIETVSRCWRLVGVLDCEEGKEVKEVAASAATVVSLPAVVVSVGGRECVICKDEMRVGRDVCQLPCQHLFHWMCILPWLGNKNTCPCCRFRLPSDDVFGEIQRLWEILLKMGAG* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1225 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 263 IPR013083 -
Tpr3g1225 277 ProSiteProfiles Zinc finger RING-type profile. 211 252 IPR001841 -
Tpr3g1225 277 SUPERFAMILY RING/U-box 210 257 - -
Tpr3g1225 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 5 274 - -
Tpr3g1225 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 5 274 - -
Tpr3g1225 277 Pfam Ring finger domain 210 252 IPR001841 -
Tpr3g1225 277 SMART ring_2 211 251 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1225 Tpr-Chr3 10979988 10981381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1225 5 273 C3H Transcription Factor Family AT5G02750 48.043 1.27e-77 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1225 - - pvu:PHAVU_007G161400g 308.916