Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1194 ATGGATATGGAACATAACAAACAAAAGAGCAACGGAGATGAACACAGTGAGAAACTGGTACTGAAGAATAGGTCCAAGTTTGTTGGAGTGAGACAAAGGGCATCAGGGAAATGGGCAGCAGAGATTAAAGACACATCAAAGAACATTAGGATGTGGCTTGGTACATATAAAACTGCCGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCTTGTCTTCTTCGAGGTTCAAACACTCGCACCAATTTCTCTATAACTCATTCCATTCCGTCCAATTCTCCTATATCTCTCAAACTCAAAAACCTCCTCCATCGAAAATCAATCTCAAATCAACATCAAAACAAGTCCACTACGACGGCTTCCTGTTTTCAAGGTGCTCCTATTGATAATAGCATCATGGTAATGGAAAATGAAAACAATTCTTCTTGTAGTAGTGAAGAGTCAAAGTCTTTGTTTTGGGTTCAGAATCAAGTATCTGAATATAATCCTTATTATGGGGTTGATATGAATATGATGAACTGTTCATTGGGTCTTACACAAAATACATTGCAGTTTGATTATTCTTGGCCATTACCTCAACAAAGGATTAACGAGTTAACAATACCAAAAGATAATATGAATGTATATGGCATGGATGAGTTCTATGTGGAGAATACATACGAATCCAAGTATGAATATGATGTCAATTATCCTCTTTCCCACTTGTTCTGCTTCACCTGA 717 0.378 MDMEHNKQKSNGDEHSEKLVLKNRSKFVGVRQRASGKWAAEIKDTSKNIRMWLGTYKTAEEAARAYDEAACLLRGSNTRTNFSITHSIPSNSPISLKLKNLLHRKSISNQHQNKSTTTASCFQGAPIDNSIMVMENENNSSCSSEESKSLFWVQNQVSEYNPYYGVDMNMMNCSLGLTQNTLQFDYSWPLPQQRINELTIPKDNMNVYGMDEFYVENTYESKYEYDVNYPLSHLFCFT* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1194 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 133 222 - -
Tpr3g1194 238 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 120 - -
Tpr3g1194 238 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Tpr3g1194 238 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Tpr3g1194 238 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Tpr3g1194 238 CDD AP2 25 82 IPR001471 GO:0003700|GO:0006355
Tpr3g1194 238 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Tpr3g1194 238 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Tpr3g1194 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 17 120 - -
Tpr3g1194 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 133 222 - -
Tpr3g1194 238 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Tpr3g1194 238 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1194 Tpr-Chr3 10751423 10752437 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1194 23 103 AP2-EREBP Transcription Factor Family AT5G19790 75.309 2.33e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr3g1194 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1194 K09286 - gmx:100809046 259.996