Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1190 ATGGTGGCGGCAGCAGCAGCAGCATCATACGAAGAGAGTCGCCGGAAAAGAATGGAAGAAAACAAAAAGAGAATGGAAGCTCTCAATCTTCATCAACTTTCTCAATCCCTTCACAAATCATCTTCCTCCGCCGTTTCAAAACCATCCCCTTCCAAACCTCGCACTCGCACCATCCACAAAGAGCTCGTTGTTGTCCGACGCTCCAGCCGTGTCGCCAACTTGCCTACTCCCATTTACAAAGAAGTTCTTATTGATCTACCTAGAAATCGAATTTCAAGAGGAGGTTATAACAAGTACAGGGATTATTCGAAGAGAGTGTATGCTTCCGATGAAGCTAGAGAGGAAGCATTGGAAAAGGCGGAAAAGTTACAATCCGATTTAGATTCTGATCATCCAATTTTTATTAAGTCGATGCTTCAATCTCATGTCACTGGTGGATTCTGGCTGGGCCTTCCGGTTCATTTCTGCAAGGAACACCTTCCAAAACATGACGAAGAGATGACTTTGATCGATGAGGATGGGGAGGAGTCAAGAACTACATATTTGGCTAAAAAAACAGGACTTAGCGGTGGATGGAGAGGTTTTGCTATTGCTCATAACCTTGTTGACGGAGACGCTTTAATATTTGAATTAGTTAAACGCACTGCATTCAAGGTGTACATTATTAGAGTGAATGGTCCTTCGGAGGGTAAACAACTTGAGTGA 705 0.4355 MVAAAAAASYEESRRKRMEENKKRMEALNLHQLSQSLHKSSSSAVSKPSPSKPRTRTIHKELVVVRRSSRVANLPTPIYKEVLIDLPRNRISRGGYNKYRDYSKRVYASDEAREEALEKAEKLQSDLDSDHPIFIKSMLQSHVTGGFWLGLPVHFCKEHLPKHDEEMTLIDEDGEESRTTYLAKKTGLSGGWRGFAIAHNLVDGDALIFELVKRTAFKVYIIRVNGPSEGKQLE* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1190 234 MobiDBLite consensus disorder prediction 1 56 - -
Tpr3g1190 234 MobiDBLite consensus disorder prediction 10 27 - -
Tpr3g1190 234 ProSiteProfiles B3 DNA-binding domain profile. 134 225 IPR003340 GO:0003677
Tpr3g1190 234 MobiDBLite consensus disorder prediction 28 52 - -
Tpr3g1190 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 228 IPR044837 -
Tpr3g1190 234 SUPERFAMILY DNA-binding pseudobarrel domain 127 225 IPR015300 -
Tpr3g1190 234 SMART B3_2 134 225 IPR003340 GO:0003677
Tpr3g1190 234 CDD B3_DNA 132 223 IPR003340 GO:0003677
Tpr3g1190 234 Pfam B3 DNA binding domain 134 223 IPR003340 GO:0003677
Tpr3g1190 234 Gene3D - 108 226 IPR015300 -
Tpr3g1190 234 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS03G0184500 4 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1190 Tpr-Chr3 10726460 10736041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1190 9 225 B3 DNA Binding Superfamily AT3G19184 61.009 2.84e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr3g1190 B3 5.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1190 - - gmx:100794327 280.026