Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1175 ATGAACATGGAGAACCAACGAAAGAAAACCTCAGGGCGCAAGAAGATTGAGATCAAGAAGCTTGACAAACAAACCAACAAACAAGTCACATTCTCGAAAAGAAGACAAGGTTTGTTCAAGAAAGCAAGCGAACTTTGTGTTTTATGTGACGTTCATGCAGCCATCGTGGTGTTTTCTCCCGCTGACAAACTATATTGTTTTGGTGAACCAAATACCGATGCAATCCTCAATAGCTACATAAGAGGAACCACCGAGTTTGAGAGTTCAAAGTTAGCAGGAAATTCTCAGAACTACGAAGAGTACAATAAACAATATGAAGAGGCGTTGAAGATGTTAGAGATGGAAAAGAAGAAACTTGCAGATGCTGAAAATTTGGCTAAGTTTTGTAACACATTTGGTTGGTGGAATGATTCAATTGATGATATGAGTAGTGATCAACTTGAGCAATTTATGGTTTCCATTTATGAATTAAAGAGGAAGCTAATTGAAAAGGCTGATGAACATGTGATGAAGCTTCACATGTAG 525 0.379 MNMENQRKKTSGRKKIEIKKLDKQTNKQVTFSKRRQGLFKKASELCVLCDVHAAIVVFSPADKLYCFGEPNTDAILNSYIRGTTEFESSKLAGNSQNYEEYNKQYEEALKMLEMEKKKLADAENLAKFCNTFGWWNDSIDDMSSDQLEQFMVSIYELKRKLIEKADEHVMKLHM* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1175 174 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
Tpr3g1175 174 Gene3D - 23 126 IPR036879 GO:0003677|GO:0046983
Tpr3g1175 174 Coils Coil 95 125 - -
Tpr3g1175 174 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Tpr3g1175 174 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 172 - -
Tpr3g1175 174 PANTHER MADS BOX PROTEIN 8 172 - -
Tpr3g1175 174 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Tpr3g1175 174 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Tpr3g1175 174 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Tpr3g1175 174 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Tpr3g1175 174 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1175 Tpr-Chr3 10633115 10633639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1175 8 165 Type I MADS-box Gene Family AT5G60440 38.788 4.67e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tpr3g1175 SRF-TF 4.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1175 - - cam:101502875 237.654