Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1166 ATGAATATGTCAGATGGATATGAGAAGAGTGAGGAACATGGTGAGGATTCTTCAATGGATTCTTCACATAAGTGTTCAGTATCATTTGATTTGAATGAAGAAGCTTGTAGTGATCAAGGTATTATTAACAATGAGGAGAATGATATTGATGAGGCATGTGAGAATGAAGACAATGGTGATGATGAAGATGATGATGATGATGAGAAAACAAAGGATGATAATGATAATGATGAAGGTACTTCAAGTTCAACAAAAAGAAGTAGTGGATCAAATGAAAGAAGAAATGGTGTAAGACAATATGTTAGATCAAAGATGCCTAGACTTAGATGGACTCCTGATCTTCATCATTCCTTTGTTCATGCTGTTGAAAGGCTTGGAGGCCAAGAGAGAGCAACACCCAAATTGGTGCTTCAGCTAATGAATGTGAGAGGACTAAGCATTGCTCATGTTAAGAGTCACTTGCAGATGTACCGGAGCAAAAAACTTGACGAGGTTGGACAAGTGCTAAGTCCAACACAAAGATCAACACATGAACTAGGTTCCATTTCTCATGTAGCCCATCAATATTCCATGGTTCCTCATCAACATTTCAAGATGGCAAATGGTGGAATTGTTCTAGAAACAAATTACAACCAAAACAGTTATAATTTCCACAGTCTCCTTCATCCCTCATCCTTATCACATTCAAAACCCATCAATTTAAGGCACAATCAATGGTACTTAAACCATCAACCTTTGAGACCAAGCTTTGGGAGCAATGAAGTTGTCTCCTCCTCAACAGCCTTACATATGCTACAAGGAAGATCATCGGTAGCTTCGAACCAACAGCTTCAACTAATGGATACGACGGCCAATACCACACTTGCTCCAATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTAGATATCATGAACAATCATCAATATTTGAAGAAAAATTTACATGCCAATATTGTTTCTACTTTTGGCCCCACTACAACATCACTTAGACCAGCTGAAGTGAACTTTGGAAACAATACAAGATTCAGGGATCATCTATCAAACATCAATGAGCACCACAATTCTTTCAATAGTTCAAAGCTTCAATTTGATCCCCCATTTCGGATTAAGTTGAATGAAGAAACATTGGAGAAAGAGAAAAAATGGGTACCTGATTTGCAACTGAGTTTAAGTCAAACAAATAGCAACAATGATGGCAAGAGTGATCATGGTTTTAGAGAAACCAAAGAAATCAACACAAAACTCTCACTTTCTTAG 1269 0.3767 MNMSDGYEKSEEHGEDSSMDSSHKCSVSFDLNEEACSDQGIINNEENDIDEACENEDNGDDEDDDDDEKTKDDNDNDEGTSSSTKRSSGSNERRNGVRQYVRSKMPRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEVGQVLSPTQRSTHELGSISHVAHQYSMVPHQHFKMANGGIVLETNYNQNSYNFHSLLHPSSLSHSKPINLRHNQWYLNHQPLRPSFGSNEVVSSSTALHMLQGRSSVASNQQLQLMDTTANTTLAPMRPSQFLEEKRWPPLDIMNNHQYLKKNLHANIVSTFGPTTTSLRPAEVNFGNNTRFRDHLSNINEHHNSFNSSKLQFDPPFRIKLNEETLEKEKKWVPDLQLSLSQTNSNNDGKSDHGFRETKEINTKLSLS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1166 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 162 IPR017930 -
Tpr3g1166 422 MobiDBLite consensus disorder prediction 1 20 - -
Tpr3g1166 422 SUPERFAMILY Homeodomain-like 104 160 IPR009057 -
Tpr3g1166 422 Pfam Myb-like DNA-binding domain 108 158 IPR001005 -
Tpr3g1166 422 MobiDBLite consensus disorder prediction 1 101 - -
Tpr3g1166 422 MobiDBLite consensus disorder prediction 44 73 - -
Tpr3g1166 422 MobiDBLite consensus disorder prediction 391 422 - -
Tpr3g1166 422 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 106 161 IPR006447 GO:0003677
Tpr3g1166 422 MobiDBLite consensus disorder prediction 81 96 - -
Tpr3g1166 422 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 3 422 - -
Tpr3g1166 422 Gene3D - 105 162 - -
Tpr3g1166 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 422 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1166 Tpr-Chr3 10547930 10553145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1166 95 163 G2-like Transcription Factor Family AT2G42660 81.159 7.69e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr3g1166 Myb_DNA-binding 7.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1166 - - mtr:MTR_8g086410 588.571