Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1161 ATGGATCCAGCAACAAGCAAAGGAGCTGGATGTAGCTTGGGTGATAGGGTTAGTGTCTGCGGTGAAGATCGGAATTCAGAAGAGACTTGCAGCAATGATCTTGGATTGAATGAGGAGTTAAAGGAGAGATCTTTAGAAGATAAGGGTCAGAATCAGAATGTTGGTGTTGATCCCCGAAAAAGCAACGATGAATTGCACGGGGTTGATCAAGGGACTAGTTATAATTCAAGTAATTCGGTTAATGGGGAAGCACTTGAGACCTGTGTTGCAATAGATTCTTCTGCTCAGGTTGAGTGTATTAATGGCGGAGATAATAGAAAATTGGAAGCTAAACCGAATGAATCGGGGCTGCACGTGTTATCGATTAAAACACCTAAAGGGGTGTCTGAAACTGATAAAAATTCATGTGTGATTGATATGAACTGTGGCAGCTGCGGAGATTTTAACGAGAATTCCGATGGTGAAATGATTTGTAGGATTTGCCATCTGGCTTCTGGGCAACCGTTAGAAGCAATGGCTGTTGGAACTCCAAATAGTGTTAATGATAATGATAAAACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAACTAGGCATTGCACACCGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGCGAAATATGCGGTGAGACAGCAAAAAATATTTCCGAAGTTACTGATAATGGATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGACAATGGTAACACATCACACCGCCGCTTGGTTGGATGCTGGACCGGGCAACCATTCTGTAACTTCTTAATGGCGTGCCTGGTAATAGCTTTTGTTCTGCCATGGTTCTTTCGTGTAAAGATGTTCTAG 870 0.4218 MDPATSKGAGCSLGDRVSVCGEDRNSEETCSNDLGLNEELKERSLEDKGQNQNVGVDPRKSNDELHGVDQGTSYNSSNSVNGEALETCVAIDSSAQVECINGGDNRKLEAKPNESGLHVLSIKTPKGVSETDKNSCVIDMNCGSCGDFNENSDGEMICRICHLASGQPLEAMAVGTPNSVNDNDKTGLIMLGCACKDELGIAHRHCAEAWFKIKGNRLCEICGETAKNISEVTDNGFMEEWCESGFIDNGNTSHRRLVGCWTGQPFCNFLMACLVIAFVLPWFFRVKMF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1161 289 MobiDBLite consensus disorder prediction 22 48 - -
Tpr3g1161 289 SMART ringv_2 157 223 IPR011016 GO:0008270
Tpr3g1161 289 SUPERFAMILY RING/U-box 154 225 - -
Tpr3g1161 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 234 IPR013083 -
Tpr3g1161 289 ProSiteProfiles Zinc finger RING-CH-type profile. 150 229 IPR011016 GO:0008270
Tpr3g1161 289 MobiDBLite consensus disorder prediction 22 77 - -
Tpr3g1161 289 Pfam RING-variant domain 186 222 IPR011016 GO:0008270
Tpr3g1161 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 45 289 - -
Tpr3g1161 289 PANTHER ZINC FINGER, RING-CH-TYPE 45 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1161 Tpr-Chr3 10495795 10498322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1161 138 285 C3H Transcription Factor Family AT5G05830 40.000 9.48e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1161 - - gmx:100791129 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1161 3 10495795 10498322 Tpr7g2935 7 36617717 36620114 PCT