LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g1116	ATGAGTTTTCCAAACCAATCCATGCCAGATTCTCCCCAAAGAAATTCAGCTTTGAAGAGTGGAAGGGGAAAGATTGAGATCAAGCGAATCGAAAACACAACAAATCGCCAAGTTACTTTTTGTAAGCGTCGAAATGGCTTGCTTAAGAAGGCATATGAACTATCTGTGCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCGACCCGCGGCCGTCTCTATGAATATGCAAATAACAGTGTGAAAGCATCTATTGAGAGGTACAAGAAAGCATGTTCAGATACTTCTGGTGCTAAATCAGCTTCTGAGTCTAATGTTCAGTTTTACCAGCAAGAATCTGCCAAACTGCGAGTCCAAATCAGTAATTTGCAGAATCACAACAGGCAAATGATGGGTGAAGCTTTGAGCAATATGAATGGTAAGGATCTCAAAAACCTTGAGGCTAAATTAGAGAAAGGAATTAGCCGAGTTCGCTCCAAGAAGAATGAAATGCTGTTTGCAGAACTTGAGTACATGCAGAAGAGGATATCAGAAAGTGAGAGGAGCAACCATAATGTCAATGTGTTTCCTGGAGGCACAAACTTTGAATGTATGCATGCTCAGCAGCAGCAGCAGCAGTTTGACTCTCGCGGCTACTTCCAAGTGAATGAATTACAACCAAATGATCAGTATGCTAGGCAAGACCAGATGTCTCTTCAATTTGTTTGA	708	0.4138	MSFPNQSMPDSPQRNSALKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDTSGAKSASESNVQFYQQESAKLRVQISNLQNHNRQMMGEALSNMNGKDLKNLEAKLEKGISRVRSKKNEMLFAELEYMQKRISESERSNHNVNVFPGGTNFECMHAQQQQQQFDSRGYFQVNELQPNDQYARQDQMSLQFV*	236

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g1116	235	PANTHER	MADS BOX PROTEIN	17	229	-	-
	Tpr3g1116	235	SUPERFAMILY	SRF-like	21	92	IPR036879	GO:0003677\|GO:0046983
	Tpr3g1116	235	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	29	76	IPR002100	GO:0003677\|GO:0046983
	Tpr3g1116	235	SMART	madsneu2	20	79	IPR002100	GO:0003677\|GO:0046983
	Tpr3g1116	235	Pfam	K-box region	102	185	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tpr3g1116	235	Gene3D	-	32	101	IPR036879	GO:0003677\|GO:0046983
	Tpr3g1116	235	Coils	Coil	106	126	-	-
	Tpr3g1116	235	PANTHER	AGAMOUSB	17	229	-	-
	Tpr3g1116	235	CDD	MADS_MEF2_like	21	94	IPR033896	GO:0000977\|GO:0045944
	Tpr3g1116	235	ProSitePatterns	MADS-box domain signature.	22	76	IPR002100	GO:0003677\|GO:0046983
	Tpr3g1116	235	Coils	Coil	143	163	-	-
	Tpr3g1116	235	MobiDBLite	consensus disorder prediction	1	18	-	-
	Tpr3g1116	235	PRINTS	MADS domain signature	22	42	IPR002100	GO:0003677\|GO:0046983
	Tpr3g1116	235	PRINTS	MADS domain signature	42	57	IPR002100	GO:0003677\|GO:0046983
	Tpr3g1116	235	PRINTS	MADS domain signature	57	78	IPR002100	GO:0003677\|GO:0046983
	Tpr3g1116	235	ProSiteProfiles	K-box domain profile.	106	201	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tpr3g1116	235	MobiDBLite	consensus disorder prediction	1	24	-	-
	Tpr3g1116	235	ProSiteProfiles	MADS-box domain profile.	20	80	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g1116	Tpr-Chr3	10172320	10177892	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g1116	16	235	MADS-box Gene Family	AT3G58780	61.181	9.41e-97	281

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Tpr3g1116		K-box	1.4e-21	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g1116	K09264		-	gmx:732595	351.673

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr3g1116	3	10172320	10177892	Tpr7g2885	7	36161512	36169566	PCT