Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1112 ATGGGAATCCAAGGTCTGTTACCGCTATTGAAATCCATAATGCTTCCAATTCACATCAAAGACCTTCACGGCTGTTCTGTCGCCATCGACACCTATTCCTGGCTTCACAAGGGAGCCCTTTCTTGTAGCACTGACCTCTGTAAAGGAATACCCACTTCTAGGCACATTGAGTATTGTATGCATAGAGTGAATTTGCTTCGCCATTATGGTGTTAAACCTATTCTTGTATTTGATGGAGGTCTTTTACCAATGAAGATTGAACAAGAGAATAAGCGTCAAAGGTCTAGAAAGGATAACTTTGAACGTGCAGTTGAACATGAATCGAATGGAAATTCTAAAGCTGCATATGAATGCTACCAGAAAGCTGTTGATATTTCACCTCTCATTGCGCGAGAACTGATTCAGGTATTGAAGCAGGAGAATGTACAGTATATTGTTGCTCCTTACGAGGCAGATGCTCAAATGACGTTCTTGGCAGTTAGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTGAGTATTCCATGCTACAAAAGAATAAGGAGCTTAATTTTGAAGGCTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCCGTCCTTGCCAGGTATGGGTCTCAAAAAGGCCCATGCAAGCATTAAAAGATTTAAAAGTTATGACATGGTTCTTAAGCACTTGAAATACAATGGTGTTTCTGTACCTCCCTCTTATGAAGAGTCATTCAGAAAGGCTATACTTACTTTCCAATACCAACGAGTTTATGATCCAGTTAGCGAAAGTATTGTCCATTTGGCTAATATACCCGAGGATGTTGGTGACGAGTTAGACTTTTTAGGCCCACCCTTGCCAAAAGATATAGCACAAGGAATAGCAGAAGGTGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGATAAGTTTGTTGCCAGATTGGAAATTGCAGGAACTAGTCAATTCAAAACACTTAATTCTGAGAGGGTGAAGAAAAAGATTGATCTGCCTGTGCAGAAGAATCTATTGACCAAGTATTTCTGTTTTGCATCTCTTGAAGCAAAGAGGGAATTCAAAGCGCCTAGAACGTCACCTACTATTGCTAATCAAAGTACACCGATTTCCTCTTCGGTCAATTCCCCACAACATCAGACTTTAGAAGCTGCTGCTCGTGAAACAATGAACTCTGCTGCATCCACAGTTGACCCTGAGAGCTGTGGCAGTGACTCTCCTCCTAATTGCTATATTGAAAACCATTTTTCCACCAAAAGTTCAGAGCTTATAGAATCACAATATCACGGAGAGAAGAAGGGAAGTCCCGATCATACAATATTGAGACAGCCCAGGCAGCCAATTCATAAACCTTGTCTGGGGTTACATAAAGATCATGAGCTCACAAATGTCCAAAATAAAGTCGAAGAAAAAACCAAGGAGACAAAAAGAAAGGTAATTGTAAGGAGTCCTTATTTTCAGCAGAAGCAAGTAGAAAAGAGTGCTAGTGATGAGAAACAGGAGCCACTGTCCTCTGGCATCGTCATTGATGAGAGAAAAAATGGCATATATGGCGGAGATTTATGTAACAACCAATTAAAGACTAAAGACTTGAAAAGGAAAGTCCCCCCTAATGATAGTATTCAAAGTGCCAGGCAAATGCATCATCCTACTTCATCTACTCATGATAATGGTTGCTCTGATCATAATGTTGAAGAAGAAAAATTTGGGACAAACATTTCCCATATAGGCCATTATTCAGAAATAGCCGAGAAGTCTTTGGACAGATTTGCCTCTGTAATATCGGCTTTTAAATATACCTCTGGCTCTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTCCGCAACACCCATAATAATAGGCCAGCAGCTGTGGATTTTAGCCAATTTGCATATGTGCCAAAACCAACAAAGACTCGAAGAGTAGCTCCTGATACTAGAAGAGTAGCTCCAGATACCCACAACACTCGTAAAACTAGGCCAACAGCTGTGGACTTGAACCAGTTTGCATATGTGCCAAAACAAAGACTAGAAGAATAG 2139 0.4053 MGIQGLLPLLKSIMLPIHIKDLHGCSVAIDTYSWLHKGALSCSTDLCKGIPTSRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKIEQENKRQRSRKDNFERAVEHESNGNSKAAYECYQKAVDISPLIARELIQVLKQENVQYIVAPYEADAQMTFLAVSRQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFEYSMLQKNKELNFEGFNRQMLLEMCILSGCDYLPSLPGMGLKKAHASIKRFKSYDMVLKHLKYNGVSVPPSYEESFRKAILTFQYQRVYDPVSESIVHLANIPEDVGDELDFLGPPLPKDIAQGIAEGDLDPITKMPFEGDKFVARLEIAGTSQFKTLNSERVKKKIDLPVQKNLLTKYFCFASLEAKREFKAPRTSPTIANQSTPISSSVNSPQHQTLEAAARETMNSAASTVDPESCGSDSPPNCYIENHFSTKSSELIESQYHGEKKGSPDHTILRQPRQPIHKPCLGLHKDHELTNVQNKVEEKTKETKRKVIVRSPYFQQKQVEKSASDEKQEPLSSGIVIDERKNGIYGGDLCNNQLKTKDLKRKVPPNDSIQSARQMHHPTSSTHDNGCSDHNVEEEKFGTNISHIGHYSEIAEKSLDRFASVISAFKYTSGSRVSGLRAPLKDVRNTHNNRPAAVDFSQFAYVPKPTKTRRVAPDTRRVAPDTHNTRKTRPTAVDLNQFAYVPKQRLEE* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1112 712 SMART xpgineu 138 213 IPR006086 GO:0004518
Tpr3g1112 712 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Tpr3g1112 712 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Tpr3g1112 712 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Tpr3g1112 712 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Tpr3g1112 712 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Tpr3g1112 712 MobiDBLite consensus disorder prediction 389 409 - -
Tpr3g1112 712 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Tpr3g1112 712 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Tpr3g1112 712 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Tpr3g1112 712 Gene3D - 1 207 - -
Tpr3g1112 712 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Tpr3g1112 712 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Tpr3g1112 712 MobiDBLite consensus disorder prediction 391 409 - -
Tpr3g1112 712 MobiDBLite consensus disorder prediction 566 590 - -
Tpr3g1112 712 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 653 IPR006084 -
Tpr3g1112 712 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Tpr3g1112 712 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
Tpr3g1112 712 PANTHER EXONUCLEASE 1 1 653 IPR032641 GO:0006281|GO:0035312
Tpr3g1112 712 MobiDBLite consensus disorder prediction 571 590 - -
Tpr3g1112 712 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Tpr3g1112 712 Gene3D - 209 281 - -
Tpr3g1112 712 SMART xpgn3 1 99 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1112 Tpr-Chr3 10136924 10142885 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1112 1 267 Core DNA Replication Machinery Family AT5G26680 25.357 1.37e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1112 K10746 - gmx:100798062 859.366