Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1092 ATGGCAATGAATAATAGACGGATGGAATTTGGGAGGCCTGTCTCAGGTAAAAGAAGATTGAAGGATTTAATGCTTCAAAAAGATAACCGCTTATGTGCTGATTGTGGTGCTCGAGATCCTAAATGGGCGTCAGCCAACATTGGAGTTTTTGTATGCTTAAAATGTTGCACTGTGCACAGAAGTCTCGGTACTCAAATATCAAAGATTTTGTCAGTGACATTGGACGAATGGTCAAATGATGAAATAGATGCAATGATAGAAGTTGGCGGAAATGCTTCTGCTAATTCAATTTATGAGGCTTATATTCCAGAAGGATATACAAAACCTGGACCAGATGCTAGTCACGAGCAACGTGAAAATTTCATCAGGTCAAAGTATGAGCGTCAAGAATTTTTGAAACATAGTTTGCGCATTGTATCAACAAAAAGTAGTGATCGTCGAGAAAGTTTCTCCAAAAGGCTTATGGATAGCTTTCGATCTACCAGTTGTTCAAAGAATATGGACGGAACGGTGGAATTTATTGGAACGTTGAAAGTGAAAGTAGTTCAAGGCACAAATTTAGCAATCAGAGATATGATGACAAGCGACCCGTATGTTGTTTTGAAGCTTGGCGAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAATTTGGAATGAAGAACTTACGTTGTCAGTTCCTCAACAATATGGAACAATAAGTTTGAAGGTATTTGATCAAGACTTGTTTTCAGCTGATGATATAATGGGAGAAGCAGATATTGATCTTCAACCTTTGATAACATCTGCAATGGCATTTGGTGGTGCTGGAATGTATGATGATATGAAAATAGGAAAATGGCTGAAATCCAATGACAATGCACTTATAGAAGATAGCATAGTCAATATCATTGATGGTAAGGTTAGACAAGAGATTGGAATCAAGCTCCAAAATGTCGAATGTGGAGAAATATACTTAGAACTTGAATGGAATCCTAATCAATAG 993 0.3726 MAMNNRRMEFGRPVSGKRRLKDLMLQKDNRLCADCGARDPKWASANIGVFVCLKCCTVHRSLGTQISKILSVTLDEWSNDEIDAMIEVGGNASANSIYEAYIPEGYTKPGPDASHEQRENFIRSKYERQEFLKHSLRIVSTKSSDRRESFSKRLMDSFRSTSCSKNMDGTVEFIGTLKVKVVQGTNLAIRDMMTSDPYVVLKLGEQTVQTTVIKSNLNPIWNEELTLSVPQQYGTISLKVFDQDLFSADDIMGEADIDLQPLITSAMAFGGAGMYDDMKIGKWLKSNDNALIEDSIVNIIDGKVRQEIGIKLQNVECGEIYLELEWNPNQ* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1092 330 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 328 - -
Tpr3g1092 330 CDD ArfGap 20 126 - -
Tpr3g1092 330 CDD C2_ArfGAP 174 318 - -
Tpr3g1092 330 Gene3D C2 domain 172 330 IPR035892 -
Tpr3g1092 330 Pfam Putative GTPase activating protein for Arf 18 133 IPR001164 GO:0005096
Tpr3g1092 330 ProSiteProfiles C2 domain profile. 155 272 IPR000008 -
Tpr3g1092 330 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 328 IPR044518 GO:0005096|GO:0005543
Tpr3g1092 330 SMART C2_3c 176 271 IPR000008 -
Tpr3g1092 330 ProSiteProfiles ARF GTPase-activating proteins domain profile. 17 146 IPR001164 GO:0005096
Tpr3g1092 330 SUPERFAMILY ArfGap/RecO-like zinc finger 17 133 IPR037278 -
Tpr3g1092 330 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 173 269 IPR035892 -
Tpr3g1092 330 Pfam C2 domain 175 265 IPR000008 -
Tpr3g1092 330 Gene3D Arf GTPase activating protein 5 138 IPR038508 -
Tpr3g1092 330 PRINTS HIV Rev interacting protein signature 29 48 IPR001164 GO:0005096
Tpr3g1092 330 PRINTS HIV Rev interacting protein signature 48 65 IPR001164 GO:0005096
Tpr3g1092 330 PRINTS HIV Rev interacting protein signature 69 90 IPR001164 GO:0005096
Tpr3g1092 330 SMART arf_gap_3 17 139 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1092 Tpr-Chr3 9984887 9988473 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1092 10 328 C2H2 Transcription Factor Family AT4G21160 70.031 3.54e-177 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1092 K12486 - gmx:100777084 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1092 3 9984887 9988473 Tpr3g1092 3 9984887 9988473 ECH