Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1077 ATGATTAGAAACTTATTAGTTTTGCTTTCAACAATTTTTGCAGTGGTTAATGCATTCAACAACCACAATGAAAATCATGGTGGTTATCCAACATGGTTTTCTAAATCTAATCGTATGTTGTTGTCTAACTTTAACGATGTTGTTCAGCCCAATGTAACGGTGGCTAAAGATGGTAGTGGCCAATTTAAAACCATTACTGAAGCTATTAACTCATACCCAGTTAAAAATCGACGAGATAGATTCGTCATCTATGTTAAAGCCGGTATCTATAACGAGTATATTACCATTGCTAAGAACAAGAATAACATTCTCTTGTATGGTGATGGCCCTACAAAAACCATTATCACCGGAAGCAAGGCTCTCAACAAAGAAGGAACTGACAAAACAATGGACACTGCTACCTTCTCCACCCTAGCCAAAGATTTTACGGCTAAGTCGATTACATTTGAGAACACGGCTGGTCATGACGCTGGCCCGGCAGCGGCACTTCACGTGAAAGGTGATCGTTCGGCATTTTTTGATTGTGGAATTCATGGTTACCAAGACACATTGTATGTACACACACTCCGTCAATTCTACCGCGATTGTGAGATCTCTGGAACCACTGATTTCATCTTTGGACATTCAACTACCTTGATCCAAAATTCTAAAATCATTGTGAGAAAGCCAGGTCCAAACCACACCAACATTGTGGTGGCAGATGGAACAGCAACAATGAATGCGGTCACCGGAATAGTCCTTCAAAATTGCTCAATCATGCCAGATAATGAGCTTTACCCTACTAGGTTGACAGTGAAGACTTACTTAGCAAGACCATGGAGGCCATACTCAAGGGCAGTATTTGTCAACAATTTTATGGGTGATTTGATTCAACCAGATGGATATTCGATTTGGGGTCCTAATGAAACACACATTGAAAACTGCTACTTTGCAGAATTTGGTAGCACTGGACCAGGTGCCAATTCTCAAGCAAGGGTTAAATGGAGTAAAGGTCTTATTAGTAAGGAAGAAGCTACTAAATTCACTGCTCAACCGTGGCTCCAAGCTAACACTTGGTTGCCTGCCACTGGCATTCCTTTCAGTTCTGACCTTGAAGCTTAA 1101 0.4096 MIRNLLVLLSTIFAVVNAFNNHNENHGGYPTWFSKSNRMLLSNFNDVVQPNVTVAKDGSGQFKTITEAINSYPVKNRRDRFVIYVKAGIYNEYITIAKNKNNILLYGDGPTKTIITGSKALNKEGTDKTMDTATFSTLAKDFTAKSITFENTAGHDAGPAAALHVKGDRSAFFDCGIHGYQDTLYVHTLRQFYRDCEISGTTDFIFGHSTTLIQNSKIIVRKPGPNHTNIVVADGTATMNAVTGIVLQNCSIMPDNELYPTRLTVKTYLARPWRPYSRAVFVNNFMGDLIQPDGYSIWGPNETHIENCYFAEFGSTGPGANSQARVKWSKGLISKEEATKFTAQPWLQANTWLPATGIPFSSDLEA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1077 366 Pfam Pectinesterase 51 349 IPR000070 GO:0030599|GO:0042545
Tpr3g1077 366 PANTHER PECTINESTERASE 21 363 - -
Tpr3g1077 366 ProSitePatterns Pectinesterase signature 2. 198 207 IPR033131 -
Tpr3g1077 366 Gene3D - 45 364 IPR012334 -
Tpr3g1077 366 PANTHER PECTINESTERASE 21 363 - -
Tpr3g1077 366 SUPERFAMILY Pectin lyase-like 48 363 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1077 Tpr-Chr3 9811315 9813371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1077 28 364 Carbohydrate Esterase AT2G47030 44.253 1.97e-97 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1077 K01051 - gmx:100808559 454.136