Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1070 ATGACTTCTTTCACTAACAATCCATCCTTCCCGGTTGGTCTGAAAGTTCTTGCAGTTGATCACGACATCGGTGCTCTCTGCACTATACGGGACATATGCAATGGCTTGTGCTATCAAGTGATCACTTGTTGCACTATTTCTGATGCAAGGAATTACTTGTTCAACCAAAACTTTGATATCATTCTTATTGAAGCTAATATGCCAAGCAATGATACTTTTGATTTTGTTGGACAAATTACTTCACATTTTCCTGTCATCATGATGTCTCATGATCCCACACCTTCTTCCGTTATGGATTCTATTACCCAAGGGGCTTGTGCATTCTGGTCCAAGCCCTTGGAAGAGAACCAGTTTAAGATCATGTGGCAACATCTTGTACGGAAGGCTTTGAGCGAAACTCCTGAACTTCCTCAAACCTTGGAGGTTAAAGGCGGAAAAAAACGAGGAAGAGAAGATGTTGATTTACCAAAACAACCGCTTCCAAAGAAAAGCCGTTTGTCATGGACACCCGACTTGGACAAACAATTCTTAACGGCTGTGAATCAACTCGGAGTTAATAGTATTAATGCAACACCCAAAAATATTCTTAAGTTGATGAACTTTCCCGATTTGACAGCAGGGCAAGTAGCTAGCCATTTACAGAAATATCGGAAGTATTTAAAAGGGGAAATCAAAAAATCAAAGTTCAGTAGGCTATCTGCTTTTCAAGGTCATGATGAAATTCCTACACAAGAACAACATTCTGCTTTTCAAGGTCATGATGAAATTTCTACACAAGAACAACATTTGACGGAAATTGGCGAATGTGACATTTTTTTTGACCTGTCCGAATTGTTCCCAGATTTTGTCGATACCTTATAA 861 0.3937 MTSFTNNPSFPVGLKVLAVDHDIGALCTIRDICNGLCYQVITCCTISDARNYLFNQNFDIILIEANMPSNDTFDFVGQITSHFPVIMMSHDPTPSSVMDSITQGACAFWSKPLEENQFKIMWQHLVRKALSETPELPQTLEVKGGKKRGREDVDLPKQPLPKKSRLSWTPDLDKQFLTAVNQLGVNSINATPKNILKLMNFPDLTAGQVASHLQKYRKYLKGEIKKSKFSRLSAFQGHDEIPTQEQHSAFQGHDEISTQEQHLTEIGECDIFFDLSELFPDFVDTL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1070 286 SMART REC_2 14 122 IPR001789 GO:0000160
Tpr3g1070 286 Gene3D - 160 222 - -
Tpr3g1070 286 Pfam Response regulator receiver domain 16 118 IPR001789 GO:0000160
Tpr3g1070 286 ProSiteProfiles Response regulatory domain profile. 15 126 IPR001789 GO:0000160
Tpr3g1070 286 Gene3D - 12 131 - -
Tpr3g1070 286 SUPERFAMILY CheY-like 13 132 IPR011006 -
Tpr3g1070 286 MobiDBLite consensus disorder prediction 137 162 - -
Tpr3g1070 286 SUPERFAMILY Homeodomain-like 161 222 IPR009057 -
Tpr3g1070 286 Pfam Myb-like DNA-binding domain 166 217 IPR001005 -
Tpr3g1070 286 MobiDBLite consensus disorder prediction 141 159 - -
Tpr3g1070 286 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 250 IPR045279 GO:0009736
Tpr3g1070 286 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 10 250 - -
Tpr3g1070 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 163 218 IPR006447 GO:0003677
Tpr3g1070 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 221 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1070 Tpr-Chr3 9750548 9756372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1070 10 221 Response Regulator Gene Family AT2G25180 35.950 7.81e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tpr3g1070 Response_reg 4.1e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1070 - K14491 mtr:MTR_4g021760 229.18