Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1068 ATGGATCAATTTGACATTCCACAAAAGTCTCCAAACAAGGAAAGTGAAAGTCTTAACAAAGAAACAGTTTTCTTACATGGTGACTTAGATCTATTAATCATAGAAGCTAAATCTCTTCCAAATCTTGATTTATCAACTGAAGCAATTAGAAGATGTATTACTATGGGAAACAGTTGCACACCGCCTTTTGTAAAAGGACTCAAAACACACTCAGGAAAAGATAAGATCATAACAAGTGATCCTTATGTATCGGTTTGTCTATCTGGTGCAACCATAGCACAAACTCGAGTAATTCCAAATTGTGAAAACCCTTTATGGGATGAACATTTTGTTGTTCCTGTTGCTCATCCTGTTCAAAAAGTTGAGTTTTCAGTAAAAGATAATGACATTCTTGGTGCGGAACTCATTGGTACCGTGGACATACCTGTTCAAAAGATACTATCTGGTGAGACTCTTAATGATTGGTTTCCGATTATAGGTCAATATGGAAATTGTTTAAAGCCTTATCCTGAGTTGCATATTTCTATTCAATTTAAGGCAATTGATACGATTAAACAGGATTATGGAAGTGTAAATTTAGGTGTTCCTGGTACATATTTTCCGCTTAGGAAAGGAGGGAATGTTACTCTTTATCAAGATGCACATGTACCAGACGGTATGTTACCTGATATTGAACTTGAAGATGGAAAAATGTATCAACATAGTAAATGTTGGGAGGATATTTGTCACGCGATTTTGGAAGCTCATCATTTGATATATATTATCGGATGGTCGGTTTTTCACCCTGTGAAGCTTGTTCGAGAACCGACAAAACCATTGCCTTCTGGCGGAGAGCTTACACTTGGAGAGCTTTTGAAATACAAGTCACAAGAAGGGTTAAGAGTTGTTATGCTTATTTGGGATGATAGAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTGATGCAGACTCATGATGAAGAAACTAAAAAGTTTTTTAAACACTCCACTGTTCATTGTGTGTTATCTCCGCGCTATGCAAGCAATAAACTCAGTATTTTCAAGCAACAGGTGGTAGGAACACTCTTTACGCATCACCAGAAATGTGTGCTTCTAGACACTCAAGGTTCTGGGAATAATCGAAAAATAACAGCTTTTATCGGTGGTCTTGATCTGTGTGATGGAAGATATGATACTCCTGAGCATAGACTTTTTCGTGATATTGATTCGGTCTTTCATAATGATTTTCATAATCCTACATTTCAATTAAATTCTAATTCTTATGCACCAAGACAACCATGGCATGACTTACATTGCAAAATTGAAGGTCCAGCTGCATATGATATATTAACCAATTTTGAACAAAGATCACGGAAGGCTAAAAAGTGGCGCGATTTCAGGCTTAGAAAGGTGACAAATTGGCATGATGATGCTTTACTAAGGCTAGATCGTATTTCATGGATTGTCAAACCAAATTCTGGTCCTGAAGGCGATAAATCTGTTCGTGTAACCGAAGACTCCGATCCTGAGAATTGGCATGTACAGATATTTCGGTCCATAGATTCAGGATCTGTGAAGGGATTTCCAAAGGATTTCGACAAAGCAAAAGCTCAGAATCTTTTATGTGGAAAAAATTTAAAAGTTGATCAAAGCATCCATGCTGCTTATGTAAAAGCGATAAGATCCGCGGAGCGCTTCATTTATATTGAGAATCAGTATTTTCTTGGCTCCTCATATCATTGGCCTTCATATAAAAATGCAGGTGCAAATCACTTGATTCCGATGGAGTTGGCTTTAAAAATTGCGAACAAGATAAGCAAGAATGAACGCTTTTCTGTCTATATAGTTATACCAATGTGGCCAGAAGGAGTTCCAACTAGTGCCGCTGTTCAAGAAATTTTGTTCTGGCAAGGACAAACAATGTCTATGATGTACAAGATTATTGCAGATGCACTTGCAAAAGCAGGTCTCTCTGAATGTTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGCAAAAGAGAACCTCAAGCGAACGAAAGTGCGTCACCAATAAATCAATCATCTGAAAACCGCGCCTTGGTATCAGTTAAAAAATACAGGCGTTTTATGATTTATGTTCATGCCAAAGGAATGATAGTTGATGATGGATATGTAATCATTGGATCAGCAAATATTAATCAGAGATCATTAGATGGATCAAGAGACACAGAAATAGCCATGGGGGCTTATCAACCAAAACATACATTGCAACAAAAGAACACTCTTCCACGCGGCCAGGTGTATGGATACCGAATGTCACTTTGGGCTGAGCACCTTGGTGGTATTGATGACACTATTACTAAACCTCACACACTTGAATGTATTAGACATGTTAATAGAATGGCTAGGAAAAATTGGAGCATATATGTATCCGAGGAAGGGCAAGAAATGATGGGAAGCTTGATGCTATATCCAGTTCATATTAGCAGAAATGGAAAAGTTAGTTCACTACAAGGTCATGAGTCTTTTCCTGATGTTGGTGGCAAAATTCTTGGAGCACATAATTCACTTCCAGATGCATTAACCACATGA 2562 0.3759 MDQFDIPQKSPNKESESLNKETVFLHGDLDLLIIEAKSLPNLDLSTEAIRRCITMGNSCTPPFVKGLKTHSGKDKIITSDPYVSVCLSGATIAQTRVIPNCENPLWDEHFVVPVAHPVQKVEFSVKDNDILGAELIGTVDIPVQKILSGETLNDWFPIIGQYGNCLKPYPELHISIQFKAIDTIKQDYGSVNLGVPGTYFPLRKGGNVTLYQDAHVPDGMLPDIELEDGKMYQHSKCWEDICHAILEAHHLIYIIGWSVFHPVKLVREPTKPLPSGGELTLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLLDTQGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDIDSVFHNDFHNPTFQLNSNSYAPRQPWHDLHCKIEGPAAYDILTNFEQRSRKAKKWRDFRLRKVTNWHDDALLRLDRISWIVKPNSGPEGDKSVRVTEDSDPENWHVQIFRSIDSGSVKGFPKDFDKAKAQNLLCGKNLKVDQSIHAAYVKAIRSAERFIYIENQYFLGSSYHWPSYKNAGANHLIPMELALKIANKISKNERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALAKAGLSECYHPQDYLNFYCLGKREPQANESASPINQSSENRALVSVKKYRRFMIYVHAKGMIVDDGYVIIGSANINQRSLDGSRDTEIAMGAYQPKHTLQQKNTLPRGQVYGYRMSLWAEHLGGIDDTITKPHTLECIRHVNRMARKNWSIYVSEEGQEMMGSLMLYPVHISRNGKVSSLQGHESFPDVGGKILGAHNSLPDALTT* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1068 853 SMART pld_4 699 726 IPR001736 GO:0003824
Tpr3g1068 853 SMART pld_4 356 391 IPR001736 GO:0003824
Tpr3g1068 853 SUPERFAMILY Phospholipase D/nuclease 545 782 - -
Tpr3g1068 853 PIRSF PLD_plant 13 853 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Tpr3g1068 853 Pfam C2 domain 27 158 IPR000008 -
Tpr3g1068 853 ProSiteProfiles C2 domain profile. 10 156 IPR000008 -
Tpr3g1068 853 PANTHER PHOSPHOLIPASE D 20 853 IPR015679 -
Tpr3g1068 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 699 726 IPR001736 GO:0003824
Tpr3g1068 853 PANTHER PHOSPHOLIPASE D 20 853 - -
Tpr3g1068 853 Pfam Phospholipase D Active site motif 357 391 IPR001736 GO:0003824
Tpr3g1068 853 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 356 391 IPR001736 GO:0003824
Tpr3g1068 853 SUPERFAMILY Phospholipase D/nuclease 198 459 - -
Tpr3g1068 853 Gene3D C2 domain 23 181 IPR035892 -
Tpr3g1068 853 Pfam Phospholipase D C terminal 773 843 IPR024632 -
Tpr3g1068 853 Gene3D Endonuclease Chain A 516 754 - -
Tpr3g1068 853 Pfam PLD-like domain 555 735 IPR025202 -
Tpr3g1068 853 SMART C2_3c 28 155 IPR000008 -
Tpr3g1068 853 CDD C2_plant_PLD 22 178 - -
Tpr3g1068 853 Gene3D Endonuclease Chain A 225 473 - -
Tpr3g1068 853 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 179 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1068 Tpr-Chr3 9734454 9738091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1068 21 852 Phospholipase D Gene Family (Wang group) AT2G42010 53.526 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1068 K01115 - gmx:100810824 1477.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1068 3 9734454 9738091 Tpr3g1068 3 9734454 9738091 ECH