Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1041 ATGCAGAGTCAAATTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTATCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATCACCCCTGTTCCTCCACCTGGGATGGATATGGCTCAACTATATTGTGGAGGCTGTAGAACATTGCTAATGTACACACGCGGGGCTACAAGTGTCAGGTGTTCTTGCTGTCACACTGTAAACCTTGCTCCAGCATCTAATCAAGTCGCCCATGTCCCTTGCGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATATTACTAATATCAATATGTCCAATGGAAGGCTTCCAATTCCTGGTCAAAGACCTAATGGGACAACCAACTCGGGAACGATGCCTTCTACTTCAACATCGATGCCCCAATCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTTACAACAGATAAGAAATAA 531 0.4482 MQSQIVCNGCRSMLLYPRGATNVCCALCNTITPVPPPGMDMAQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPASNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLPIPGQRPNGTTNSGTMPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1041 176 PANTHER LSD1-LIKE PROTEIN 1 174 - -
Tpr3g1041 176 MobiDBLite consensus disorder prediction 118 146 - -
Tpr3g1041 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Tpr3g1041 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Tpr3g1041 176 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Tpr3g1041 176 PANTHER PROTEIN LSD1 1 174 IPR040319 -
Tpr3g1041 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Tpr3g1041 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Tpr3g1041 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1041 Tpr-Chr3 9439514 9443911 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Tpr3g1041 zf-LSD1 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1041 - - mtr:MTR_8g089310 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1041 3 9439514 9443911 Tpr3g1041 3 9439514 9443911 ECH