Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1001 ATGCACACTCTCATTTTTTTCTCTTCACCTTCCATTCAAATCTCCATTTTCAACAACACATGTTTCTCTCTTTTTTTTCCAATTCTCATTCATGTATCATATATCATTCTCTTTTCCTCTCCCTTTATTATTTCAATCCTTATGGGAAGAACCAAAGTTTCCACCCTTTTTCCTTCCAATAACAACCATCACTACACTCTTCCTCTTTCCAATACCATTCACCAAACTCTTGTTAACAAACCCAATTCACACAAAAACCGTTTCCCCTTTACAGTTTTGGAATTTCTCCGACGCTTTATCTCCGGAAGGAAAGTTGATGGAGGTTCAAGAACAGAGGAAGAAGAGAGAGTGTATTCTTGGTTATATACTTTGGCTCAGTCTGAGAAAAACTTGGTCTTTGAGTACGTTAGGTCAACTGAAAGAGGCTTAAGTTTTACTGAAGCTGAGAGGAGGCTGCGGGAAAATGGCCCAAATGTTCCACTCGAGTATTCTTTTCCAAGCTGGTGGCATCTTCTATGGAACGCGTTTTTCCATCCTTTCAATATGATTCTGATTGTTTTATCTTCTATGTCATTCATTGCCAGAGACTATCCCAATGGTTTCATCATGCTCATATTGGTTTTTATCAGTGTCATCATTCGTTTCTGTCTGGAACACAAAAGCTCAAAAGCAGCTATGAAGCTTTCAGAATTTTTAAGATCTCCTATAAAAGTTCAAAGATGTGCCGGTAGAATTGAGCAGAAAGAACTGATAGTTCAAGTTGATCACAAGGATGTAGTTCCAGGTGACATTGTGATTTTCGAACCTGGCGACCTCTTTCCTGGAGATATCAGACTGTTATCTTCAAAACACCTCGTTGTAAGCCAGGCCTCACTAACTGGGGAATCTTGGGCGGCTGACAAAACTTCCGATGTTAGAGAAGATCACAACACTCCTTTACTAGATTTAAGGAACATTTGCTTTATGGGAACAAATGTGGTATCAGGTACTGGAACAGGTTTAGTTATTTCAACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAAATTGGGAAGAGGAAGCCACCAGATGAATTCGAAAAGGGTCTCTGCTGGATATTTTACATGCTTATTTCAGTTATGCTTGTAGTTGTTACAATTATGTTTGTGACAGATTACACTACATCTCATGATTTGAGCAAGAGTGTTCTCTTTGCCATCTCAGTTGCATCTGTCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACGTGCCTCGCGAAAGGAGCACTCGCTATGGCTAAAGATAGATGTATTGTAAAAAGTCTAACAAGTATACGCGAGATGGGATCAATGGATATCCTTTGTATTGATAAGACAGGCACCCTAACAATGAATCATGCAATCTTGGCTAATCATCTTGACTGCAAGGGTTTACCCCGAGAAAAAGTTCTACGCTTCGCCTTCCTCAATTCTTACTTCAAAACTGAGCAAAAGTATCCTCTGGATGATGCAATTCAAGCACATGTATATTCAAATGGATTCAAGTTTCAGCCATCCAAGTGGAAGAAGATAGATGAGATTCCTTTCGACTTCATAAGGAGAAGAGTATCTGTCATGTTAGAAACAGACGACAAACACTCGCAGTTCTTGGGGAGGTTCATGGTAACAAAAGGAGCATTGTTGGAAGTCATAAAAATATGTTCTTTTATTGAAAATTTTGACACAAATGAAATTTCTACCTTCTCATCAGATGATTATCAGAGGATTTTAAATCTATCTGAGGAATTGAGCAATGAAGGGTTAAGGGTTATAGCAGTAGCTATAAAGAAGCTGGAAATGCAGAAAACTTGTGAAACAAGTAATGGAAGCAAGAGAGGTGCCGATGATTTCGAAAGAGACATGATATTCCTTGGCCTCATAACATTTTTTGACCCACCTAAGGACTCAGCAAAGGAAGCTCTTCGGTGTTTGGCTGAGAAGGGAGTGAAAGCAAAAGTTTTAACTGGTGACTCACTTTCCTTAACCACAAGAATTTGCAGAGAAGTTGGCATAAGTACCACTCATGTTATAACAGGACCTGAGCTAGAAGAATTTGATCAAGAAACTTTCCTTGAGACTGTTAAAAGCGCCACGGTACTAGCCCGTCTCACCCCAACTCAGAAACTCCGTGTAGTGCAATCGTTACAGACAATAGGAAATCATGTAGTTGGTTTCTTAGGAGACGGTGTAAATGATTCACTAGCATTGGATGCTGCTCACGTAAGCATTTCGGTGGACTCAGGCGTAGCCATTGCCAAAGACATGGCGGATATAATCTTACTAGAGAAAGATCTCAATGTGCTCGTCGCAGGTGTTGAACACGGTCGTCTCACATTCGGCAACACAATGAAGTATATAAAGATGTCAGTTATTGCTAACTTAGGAAGTACAATTTCACTCCTCATAGCAACATTGTTCCTTAAATACGAACCTTTGACTTCAAGACAGCTTCTTACACAGAATTTCATATACAGTCTCGGACAAATCGTTATTCCTTGGGATAAAATCGATGAAGAATTTTTGAAAACTCCTCATAAGTGGTCGGAACCAGGCTTACCAATGTTCATATTATGGAATGGTCCAGTATGCACATTATGTGATATGGCAACACTTTTGTTTCTTTTGTTCTATTACAAAGCTTATGATGATGTGAATGAGAATTTTTTTCATTCAGCTTGGTTCATTGAGGGTCTTCTCATGCAAACTCTCATTGTTCATTTGATGAGGACTGAGAAAATTCCTTTCATACAAGATATTGCTTCTTGGCCTGTGATTTTGTCTACTCTTTTGATATCTTCAATTGGAATTGCAATTCCATTTACTCCTATTGGGAAGGTTATGGGATTTACAATACTACCAATCTCATATTTTGGATTTTTGGCTGTTATTTTTCTAGGATATTTTACAATTGGTCAAGTGGTTAAGAGACTTTACATATTGGTTTATAAGAAATGGCTTTGA 2985 0.3869 MHTLIFFSSPSIQISIFNNTCFSLFFPILIHVSYIILFSSPFIISILMGRTKVSTLFPSNNNHHYTLPLSNTIHQTLVNKPNSHKNRFPFTVLEFLRRFISGRKVDGGSRTEEEERVYSWLYTLAQSEKNLVFEYVRSTERGLSFTEAERRLRENGPNVPLEYSFPSWWHLLWNAFFHPFNMILIVLSSMSFIARDYPNGFIMLILVFISVIIRFCLEHKSSKAAMKLSEFLRSPIKVQRCAGRIEQKELIVQVDHKDVVPGDIVIFEPGDLFPGDIRLLSSKHLVVSQASLTGESWAADKTSDVREDHNTPLLDLRNICFMGTNVVSGTGTGLVISTGSNTYMSTMFSKIGKRKPPDEFEKGLCWIFYMLISVMLVVVTIMFVTDYTTSHDLSKSVLFAISVASVLNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIREMGSMDILCIDKTGTLTMNHAILANHLDCKGLPREKVLRFAFLNSYFKTEQKYPLDDAIQAHVYSNGFKFQPSKWKKIDEIPFDFIRRRVSVMLETDDKHSQFLGRFMVTKGALLEVIKICSFIENFDTNEISTFSSDDYQRILNLSEELSNEGLRVIAVAIKKLEMQKTCETSNGSKRGADDFERDMIFLGLITFFDPPKDSAKEALRCLAEKGVKAKVLTGDSLSLTTRICREVGISTTHVITGPELEEFDQETFLETVKSATVLARLTPTQKLRVVQSLQTIGNHVVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYIKMSVIANLGSTISLLIATLFLKYEPLTSRQLLTQNFIYSLGQIVIPWDKIDEEFLKTPHKWSEPGLPMFILWNGPVCTLCDMATLLFLLFYYKAYDDVNENFFHSAWFIEGLLMQTLIVHLMRTEKIPFIQDIASWPVILSTLLISSIGIAIPFTPIGKVMGFTILPISYFGFLAVIFLGYFTIGQVVKRLYILVYKKWL* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1001 994 SMART Cation_ATPase_N_a_2 123 196 IPR004014 -
Tpr3g1001 994 Pfam haloacid dehalogenase-like hydrolase 446 747 - -
Tpr3g1001 994 Gene3D - 462 638 IPR023299 GO:0000166
Tpr3g1001 994 Gene3D - 234 338 - -
Tpr3g1001 994 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Tpr3g1001 994 SFLD C1.7: P-type atpase like 432 784 - -
Tpr3g1001 994 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 102 993 - -
Tpr3g1001 994 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 203 497 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr3g1001 994 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 696 814 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tpr3g1001 994 SFLD p-type atpase 432 784 IPR044492 -
Tpr3g1001 994 Pfam Cation transporter/ATPase, N-terminus 134 189 IPR004014 -
Tpr3g1001 994 TIGRFAM ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 121 993 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 SUPERFAMILY Calcium ATPase, transduction domain A 249 349 IPR008250 -
Tpr3g1001 994 Gene3D - 197 944 - -
Tpr3g1001 994 Gene3D - 447 771 IPR023214 -
Tpr3g1001 994 Pfam E1-E2 ATPase 251 429 - -
Tpr3g1001 994 PRINTS Magnesium-transporting ATPase signature 363 379 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 PRINTS Magnesium-transporting ATPase signature 484 497 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 PRINTS Magnesium-transporting ATPase signature 792 807 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 PRINTS Magnesium-transporting ATPase signature 810 821 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 PRINTS Magnesium-transporting ATPase signature 842 855 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 PRINTS Magnesium-transporting ATPase signature 862 878 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 PRINTS Magnesium-transporting ATPase signature 897 918 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 PRINTS Magnesium-transporting ATPase signature 947 968 IPR006415 GO:0015444|GO:0015693|GO:0016021
Tpr3g1001 994 SUPERFAMILY Calcium ATPase, transmembrane domain M 138 991 IPR023298 -
Tpr3g1001 994 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 443 641 IPR023299 GO:0000166
Tpr3g1001 994 SUPERFAMILY HAD-like 625 782 IPR036412 -
Tpr3g1001 994 PANTHER CATION TRANSPORTING ATPASE 102 993 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1001 Tpr-Chr3 9155475 9164822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1001 132 818 Primary Pumps ATPases AT1G17260 27.684 2.17e-55 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1001 K01531 - gmx:100795153 1560.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1001 3 9155475 9164822 Tpr3g1001 3 9155475 9164822 ECH