Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g1000 ATGGTTTTTCATATGAGAAATAATCTCCTTCATTTATATCATTACAATCATGATAGCCCAAATCCTTCCCCTCAACAATCACCTGTTACACAAACTTCCTATCAAATACTTCATCATTTTCATATCCATATTCATACACTTCATATCGCGATTATCGCCACAGCTTGCTTCGTTACCACTCTTATGCTTCTTTTAATCTTTTACATTTCCCTAAGGAGAAGCTACCACTCAAGAAGACATAACCTTAACCATAACAATAACTATGTCCGAAGAAACACGCCTATATTGTTCGATGTTCATGGTTATACAGATTCTACCATTTCAAATGATGATGGTGATGATGATGATGATGAGAGGTTTATGGTCATTGATCACCCCATCTGGTTAATCCGAACAATAGGGCTTCAACAATCGACTATAGATTCGATTACAGTGTTGAAGTATAGAAAAAATGAAGGACTTTTTGATGGAACAGAGTGTTCTGTTTGTTTAGGTGAATTTCAAGAAGAAGAGAGTCTCAAACTTTTGCCTAAGTGTAGCCATGCTTTTCACGTGCCTTGTATTGATACTTGGCTTAGATCACATAAAAATTGTCCGTTGTGTCGCGCACCTGTGGTTAATGATGCTGCAGAGGTGAGTGTCACAGTTACTGATGATCAGCTTGATTCAAATATTTCTGGTGAGAGTTTGAACCAAGAAGAGGGACAGATAGAAAATTTTGATAATGTTGTTGTGGAAGGATTAGGATCACAATCACATAATGTAGGAGAATTTGAAATTATTATAGTTGATAATGATGATAGTGATTCTAGTGTATCATCTAGTGAAAGGGTAAATAAAAATAATATTGCTTAA 855 0.3544 MVFHMRNNLLHLYHYNHDSPNPSPQQSPVTQTSYQILHHFHIHIHTLHIAIIATACFVTTLMLLLIFYISLRRSYHSRRHNLNHNNNYVRRNTPILFDVHGYTDSTISNDDGDDDDDERFMVIDHPIWLIRTIGLQQSTIDSITVLKYRKNEGLFDGTECSVCLGEFQEEESLKLLPKCSHAFHVPCIDTWLRSHKNCPLCRAPVVNDAAEVSVTVTDDQLDSNISGESLNQEEGQIENFDNVVVEGLGSQSHNVGEFEIIIVDNDDSDSSVSSSERVNKNNIA* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g1000 284 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Tpr3g1000 284 SMART ring_2 160 201 IPR001841 -
Tpr3g1000 284 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 22 270 IPR044675 -
Tpr3g1000 284 SUPERFAMILY RING/U-box 146 208 - -
Tpr3g1000 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 211 IPR013083 -
Tpr3g1000 284 CDD RING-H2_PA-TM-RING 159 202 - -
Tpr3g1000 284 Pfam Ring finger domain 159 202 IPR001841 -
Tpr3g1000 284 PANTHER RING-H2 FINGER PROTEIN ATL54 22 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g1000 Tpr-Chr3 9153079 9154530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g1000 109 278 C3H Transcription Factor Family AT1G72220 45.355 6.31e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g1000 - - mtr:MTR_8g089880 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g1000 3 9153079 9154530 Tpr3g1000 3 9153079 9154530 ECH