Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0990 ATGGACGAGGAAGAGCATGAGGTTTACGGAGGAGAGATCCCAGACGTGGCAGAGATGGAAGCTGACATTGACATGTCCGGCGCCGACGATGAAGCCAGTGGTATGAAGGAGCTCGACGAGATGAGGCGCCGCTTGAAGGAAATGGAAGAAGAAGCTGCCGCTCTTCGCGAAATGCATGCTAAGGTCGAGAAGGAAATTGGCTCCGTTCAAGATCCTGCTGCTGTAGCTGCTTCTCAGGAAAACAGGGAGGAGGCAGATGCTCGATCTGTTTTTGTCGGCAATGTTGATTATGCATGCACACCAGAGGAAGTGCAGCAACACTTTCAGTCATGCGGTACAGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAGGCTCTCCTGTTAACTGAATCTGAATTGCATGGACGTCAATTGAAAGTTCTGCCTAAGAGGACTAATGTCCCTGGAATGAAACAATACCGTCCTAGGCGATTCAATCCTTACATGGCATATGGCTTCAGGAGGCCTTATGCTCCTCCTTACATGTACTCCCCTTATGGATTTGGGAAGGCTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCATATTATTAG 651 0.4808 MDEEEHEVYGGEIPDVAEMEADIDMSGADDEASGMKELDEMRRRLKEMEEEAAALREMHAKVEKEIGSVQDPAAVAASQENREEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEALLLTESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYAPPYMYSPYGFGKAPRFRRPNRYMPYY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0990 216 CDD RRM_II_PABPs 89 160 - -
Tpr3g0990 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
Tpr3g0990 216 PANTHER - 1 214 - -
Tpr3g0990 216 Coils Coil 31 65 - -
Tpr3g0990 216 SMART rrm1_1 89 160 IPR000504 GO:0003723
Tpr3g0990 216 SUPERFAMILY RNA-binding domain, RBD 78 184 IPR035979 GO:0003676
Tpr3g0990 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Tpr3g0990 216 Gene3D - 13 171 IPR012677 -
Tpr3g0990 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0990 Tpr-Chr3 9033032 9038170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0990 79 159 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 9.14e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0990 K14396 - gmx:100789721 365.155