LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr3g0987	ATGGAAGCATTCGGCGGGTACTTGGTCGATGAGAAAGCCGTTAGGGTTGAAAACGCTTTCTTAGATTTTCTCAAAAGTTTCAGATCTGGACAACGAAATGAACTGTATTACGAAGCGGAGATTGAAGTGATGAGAGCTAACGAGTCAAACACGATGTTCATTGATTTTGATCACGTTATCAGATTCAGTGATCTTCTTCAGAAAGCTATCTCCGATGAATATTTGAGGTTTGAACCTTACTTGCAGAATGCCTGCAAGAGGTTTGTTATGGAGCTTAAGCCAACTTTCATTTCTGATGATAACCCTAACAAGGACATCAATGTCGCATTCTATAATATTCCAATTGTCAAGAGGTTAAGGGAATTGGCTACATCAGAGATTGGAAGGCTTGTATCTGTTACAGGAGTGGTAACAAGAACTAGTGAGGTTCGACCGGAGCTTCTTCAAGGGACTTTCAAGTGCCTAGAATGTGGTGGGGTTATAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCAACAATCTGCCCTAATGCTACATGTAACAACAGAGCAAAGTGGGCACTGCTTCGCCAAGAGAGCAAATTTACTGATTGGCAAAGGGTGAGAATGCAGGAGACTTCCAATGAGATACCTGCAGGCTCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTGGAACATGCTAGGGCTGGTGACACGGTTATTTTTACTGGCACTGTAATTGTGATACCTGATATATTGGCATTGGCATCCCCTGGTGAGAGATCAGAATGTCGTAGGGAAGCTTCTCAACGCAAGGGTTCTTCATCTGGAAATGAAGGTGTGAGGGGCCTTAGGGCTTTAGGGGTCAGAGACCTCTCCTATCGTCTAGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATTCAGATGAAGATGATCAGCAATTTACTGAACAGGAACTGGATGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTTGTTGAGAGTGTTGCTCCAACTATTTTTGGTCATCAAGATATAAAGCGAGCAATCCTTCTTATGCTTATGAGTGGGGTCCACAAATCTACTCATGAAGGCATCAGCCTTAGAGGAGACATAAATGTTTGTATTGTTGGAGATCCTAGCTGTGCAAAGTCTCAATTCCTTAAATATACTTCAAGCATTGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGATTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATAGAGGCCGGCGCTTTGATGCTTGCTGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGATATAAGAGATCAGGTTGCAATTCATGAGGCTATGGAACAACAAACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCTGCTGCCAACCCTGCTGGAGGACGGTACGATAGGTCTAAACCACTGAAGTACAATGTGGCTCTTCCACCGGCTATACTTTCAAGGTTCGATCTTGTATACATTATGATTGATGACCCAGACGATGTTACAGATTACCACATAGCTTCTCATATTGTGCGAGTTCATCAAAAGCGCGAAGAAGCTCTTGCTCCAACGTTCACTACAGCAGAACTGAAGCGTTATATAGGCTATGCAAAAACTCTTAAACCAAAGCTAACGTCAGATGCAAGAAAACTACTGGTAGACTCTTACGTTTCTCTCCGTAGGGCTGATACAAATCCTGGCAGTAGGGTTGCATATCGTATGACAGTCAGGCAGTTGGAGGCTTTAATCAGGCTGTCAGAGGCCATTGCACGGTGTCATTTGGATAATCAGGTACAACCCCGTCATGTTCGTTTAGCAGTAAAACTGCTGCAAACATCTATAATAAGAGTGGAGTCCAGTGAGATTGATCTATCCGAGTTTCAAGATCAAGATATGGACGAAGAAGCAGGTAGTGGTGAAGGAAATGATAATAATGATGCTGATGATGGTCAAGTGGGAAGCTCTACCGCTCAGCAAGCCGCTGGAACTAATGAAAAACCAGCGGATGGGTCTATCCCCCAAAGAAAGAAATCTACTGTAACTGATGAATACTTTCAGAGGATTACCAAGGCCCTTGTCATGCGTCTTAGACAGCATGAGGAGACTGTAATGCAAAAAGAGCGCGAGAAGACTGCAAAGCAAAAAGAGGACGAGGAGACAGGAGATGTCTTGGCTGGGATGAAGCAACGAGAATTGATTAAATGGTATGTAGACCAGCAAAATGCGAAAAATAATTACAGTTCTGTGGAGGAGGCAAAAGTTGAAATTTCCCAAATTAAAGCAATTATAGAGATTTTAATTCGAAGAGAGGGGTGTCTGATAGTGATAGACGATGGCAGACAAGCAGCAACAGAAGCTGCTGGTGCAGAACAATCCGAGTCTGCGGCTAGGAATGATAGAGTTTTGGCTGTTGCTCCTAATTATTTTGTTGAATGA	2553	0.4266	MEAFGGYLVDEKAVRVENAFLDFLKSFRSGQRNELYYEAEIEVMRANESNTMFIDFDHVIRFSDLLQKAISDEYLRFEPYLQNACKRFVMELKPTFISDDNPNKDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICPNATCNNRAKWALLRQESKFTDWQRVRMQETSNEIPAGSLPRSLDVILRHEIVEHARAGDTVIFTGTVIVIPDILALASPGERSECRREASQRKGSSSGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDSDEDDQQFTEQELDEVQRMRNTPDFFTKLVESVAPTIFGHQDIKRAILLMLMSGVHKSTHEGISLRGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDRSKPLKYNVALPPAILSRFDLVYIMIDDPDDVTDYHIASHIVRVHQKREEALAPTFTTAELKRYIGYAKTLKPKLTSDARKLLVDSYVSLRRADTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNQVQPRHVRLAVKLLQTSIIRVESSEIDLSEFQDQDMDEEAGSGEGNDNNDADDGQVGSSTAQQAAGTNEKPADGSIPQRKKSTVTDEYFQRITKALVMRLRQHEETVMQKEREKTAKQKEDEETGDVLAGMKQRELIKWYVDQQNAKNNYSSVEEAKVEISQIKAIIEILIRREGCLIVIDDGRQAATEAAGAEQSESAARNDRVLAVAPNYFVE*	851

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr3g0987	850	Pfam	MCM P-loop domain	331	553	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Tpr3g0987	850	Gene3D	-	119	247	IPR012340	-
	Tpr3g0987	850	MobiDBLite	consensus disorder prediction	683	704	-	-
	Tpr3g0987	850	Coils	Coil	788	808	-	-
	Tpr3g0987	850	CDD	MCM6	346	652	-	-
	Tpr3g0987	850	Gene3D	-	8	115	-	-
	Tpr3g0987	850	Coils	Coil	735	755	-	-
	Tpr3g0987	850	Gene3D	-	712	850	-	-
	Tpr3g0987	850	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	74	86	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555
	Tpr3g0987	850	PRINTS	Mini-chromosome maintenance (MCM) protein 6 signature	116	128	IPR008049	GO:0003677\|GO:0003678\|GO:0005524\|GO:0005634\|GO:0006270\|GO:0042555

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr3g0987	Tpr-Chr3	9017186	9022727	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr3g0987	1	850	Core DNA Replication Machinery Family	AT5G44635	70.751	0.0	1260

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr3g0987	K02542		-	gmx:100787290	1372.07

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr3g0987	3	9017186	9022727	Tpr3g0987	3	9017186	9022727	ECH

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