Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0987 ATGGAAGCATTCGGCGGGTACTTGGTCGATGAGAAAGCCGTTAGGGTTGAAAACGCTTTCTTAGATTTTCTCAAAAGTTTCAGATCTGGACAACGAAATGAACTGTATTACGAAGCGGAGATTGAAGTGATGAGAGCTAACGAGTCAAACACGATGTTCATTGATTTTGATCACGTTATCAGATTCAGTGATCTTCTTCAGAAAGCTATCTCCGATGAATATTTGAGGTTTGAACCTTACTTGCAGAATGCCTGCAAGAGGTTTGTTATGGAGCTTAAGCCAACTTTCATTTCTGATGATAACCCTAACAAGGACATCAATGTCGCATTCTATAATATTCCAATTGTCAAGAGGTTAAGGGAATTGGCTACATCAGAGATTGGAAGGCTTGTATCTGTTACAGGAGTGGTAACAAGAACTAGTGAGGTTCGACCGGAGCTTCTTCAAGGGACTTTCAAGTGCCTAGAATGTGGTGGGGTTATAAAGAATGTTGAACAGCAATTCAAGTATACTGAGCCAACAATCTGCCCTAATGCTACATGTAACAACAGAGCAAAGTGGGCACTGCTTCGCCAAGAGAGCAAATTTACTGATTGGCAAAGGGTGAGAATGCAGGAGACTTCCAATGAGATACCTGCAGGCTCTCTGCCTAGGTCATTGGATGTTATTCTTCGTCATGAGATTGTGGAACATGCTAGGGCTGGTGACACGGTTATTTTTACTGGCACTGTAATTGTGATACCTGATATATTGGCATTGGCATCCCCTGGTGAGAGATCAGAATGTCGTAGGGAAGCTTCTCAACGCAAGGGTTCTTCATCTGGAAATGAAGGTGTGAGGGGCCTTAGGGCTTTAGGGGTCAGAGACCTCTCCTATCGTCTAGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAGAGAAATAGACATCAGGAATAGAAAGAAGGATTCAGATGAAGATGATCAGCAATTTACTGAACAGGAACTGGATGAAGTTCAACGAATGAGGAACACTCCAGATTTCTTCACCAAACTTGTTGAGAGTGTTGCTCCAACTATTTTTGGTCATCAAGATATAAAGCGAGCAATCCTTCTTATGCTTATGAGTGGGGTCCACAAATCTACTCATGAAGGCATCAGCCTTAGAGGAGACATAAATGTTTGTATTGTTGGAGATCCTAGCTGTGCAAAGTCTCAATTCCTTAAATATACTTCAAGCATTGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCTGCTGGATTGACTGCAACTGTTGCCAAGGAACCAGAAACTGGGGAGTTTTGTATAGAGGCCGGCGCTTTGATGCTTGCTGACAATGGCATTTGCTGCATTGATGAATTTGACAAGATGGATATAAGAGATCAGGTTGCAATTCATGAGGCTATGGAACAACAAACTATTAGTATCACAAAAGCAGGAATACAAGCAACACTCAATGCTCGTACTTCCATTCTTGCTGCTGCCAACCCTGCTGGAGGACGGTACGATAGGTCTAAACCACTGAAGTACAATGTGGCTCTTCCACCGGCTATACTTTCAAGGTTCGATCTTGTATACATTATGATTGATGACCCAGACGATGTTACAGATTACCACATAGCTTCTCATATTGTGCGAGTTCATCAAAAGCGCGAAGAAGCTCTTGCTCCAACGTTCACTACAGCAGAACTGAAGCGTTATATAGGCTATGCAAAAACTCTTAAACCAAAGCTAACGTCAGATGCAAGAAAACTACTGGTAGACTCTTACGTTTCTCTCCGTAGGGCTGATACAAATCCTGGCAGTAGGGTTGCATATCGTATGACAGTCAGGCAGTTGGAGGCTTTAATCAGGCTGTCAGAGGCCATTGCACGGTGTCATTTGGATAATCAGGTACAACCCCGTCATGTTCGTTTAGCAGTAAAACTGCTGCAAACATCTATAATAAGAGTGGAGTCCAGTGAGATTGATCTATCCGAGTTTCAAGATCAAGATATGGACGAAGAAGCAGGTAGTGGTGAAGGAAATGATAATAATGATGCTGATGATGGTCAAGTGGGAAGCTCTACCGCTCAGCAAGCCGCTGGAACTAATGAAAAACCAGCGGATGGGTCTATCCCCCAAAGAAAGAAATCTACTGTAACTGATGAATACTTTCAGAGGATTACCAAGGCCCTTGTCATGCGTCTTAGACAGCATGAGGAGACTGTAATGCAAAAAGAGCGCGAGAAGACTGCAAAGCAAAAAGAGGACGAGGAGACAGGAGATGTCTTGGCTGGGATGAAGCAACGAGAATTGATTAAATGGTATGTAGACCAGCAAAATGCGAAAAATAATTACAGTTCTGTGGAGGAGGCAAAAGTTGAAATTTCCCAAATTAAAGCAATTATAGAGATTTTAATTCGAAGAGAGGGGTGTCTGATAGTGATAGACGATGGCAGACAAGCAGCAACAGAAGCTGCTGGTGCAGAACAATCCGAGTCTGCGGCTAGGAATGATAGAGTTTTGGCTGTTGCTCCTAATTATTTTGTTGAATGA 2553 0.4266 MEAFGGYLVDEKAVRVENAFLDFLKSFRSGQRNELYYEAEIEVMRANESNTMFIDFDHVIRFSDLLQKAISDEYLRFEPYLQNACKRFVMELKPTFISDDNPNKDINVAFYNIPIVKRLRELATSEIGRLVSVTGVVTRTSEVRPELLQGTFKCLECGGVIKNVEQQFKYTEPTICPNATCNNRAKWALLRQESKFTDWQRVRMQETSNEIPAGSLPRSLDVILRHEIVEHARAGDTVIFTGTVIVIPDILALASPGERSECRREASQRKGSSSGNEGVRGLRALGVRDLSYRLAFIANSVQICDGRREIDIRNRKKDSDEDDQQFTEQELDEVQRMRNTPDFFTKLVESVAPTIFGHQDIKRAILLMLMSGVHKSTHEGISLRGDINVCIVGDPSCAKSQFLKYTSSIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDRSKPLKYNVALPPAILSRFDLVYIMIDDPDDVTDYHIASHIVRVHQKREEALAPTFTTAELKRYIGYAKTLKPKLTSDARKLLVDSYVSLRRADTNPGSRVAYRMTVRQLEALIRLSEAIARCHLDNQVQPRHVRLAVKLLQTSIIRVESSEIDLSEFQDQDMDEEAGSGEGNDNNDADDGQVGSSTAQQAAGTNEKPADGSIPQRKKSTVTDEYFQRITKALVMRLRQHEETVMQKEREKTAKQKEDEETGDVLAGMKQRELIKWYVDQQNAKNNYSSVEEAKVEISQIKAIIEILIRREGCLIVIDDGRQAATEAAGAEQSESAARNDRVLAVAPNYFVE* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0987 850 Pfam MCM P-loop domain 331 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 Gene3D - 119 247 IPR012340 -
Tpr3g0987 850 MobiDBLite consensus disorder prediction 683 704 - -
Tpr3g0987 850 Coils Coil 788 808 - -
Tpr3g0987 850 CDD MCM6 346 652 - -
Tpr3g0987 850 Gene3D - 8 115 - -
Tpr3g0987 850 Coils Coil 735 755 - -
Tpr3g0987 850 Gene3D - 712 850 - -
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 74 86 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 116 128 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 166 183 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 219 230 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein 6 signature 278 299 IPR008049 GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Tpr3g0987 850 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 10 799 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 MobiDBLite consensus disorder prediction 664 718 - -
Tpr3g0987 850 SUPERFAMILY Nucleic acid-binding proteins 20 249 IPR012340 -
Tpr3g0987 850 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 657 IPR027417 -
Tpr3g0987 850 Gene3D - 146 197 - -
Tpr3g0987 850 SMART mcm 115 654 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 384 399 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 444 458 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 472 485 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 496 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 PRINTS Mini-chromosome maintenance (MCM) protein family signature 523 531 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 Pfam MCM AAA-lid domain 568 653 IPR041562 -
Tpr3g0987 850 Pfam MCM N-terminal domain 18 112 IPR027925 -
Tpr3g0987 850 Pfam MCM OB domain 119 247 IPR033762 -
Tpr3g0987 850 Pfam MCM6 C-terminal winged-helix domain 715 848 IPR041024 -
Tpr3g0987 850 ProSitePatterns MCM family signature. 452 460 IPR018525 GO:0003677|GO:0005524|GO:0006260
Tpr3g0987 850 ProSiteProfiles MCM family domain profile. 343 549 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr3g0987 850 MobiDBLite consensus disorder prediction 664 681 - -
Tpr3g0987 850 PANTHER DNA REPLICATION LICENSING FACTOR MCM6 10 799 - -
Tpr3g0987 850 Gene3D - 328 658 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0987 Tpr-Chr3 9017186 9022727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0987 1 850 Core DNA Replication Machinery Family AT5G44635 70.751 0.0 1260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0987 K02542 - gmx:100787290 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr3g0987 3 9017186 9022727 Tpr3g0987 3 9017186 9022727 ECH