Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0979 ATGCAGAACGAAGAAGGACAAATCACCGAGCTCTACATTCCTAGGAAGTGTTCTGCTACCAACAGATTGATTACTGCTAAGGATCATGCTTCTGTTCAGATCAACATAGGTCATTTGGATGAGAGCGGTATTTACAATGGCACCTTCTCTACTTTTGCTCTCTGTGGCTTCACTCGCGCTCAGGGAGATGCTGACAGTGGAATTGATCGCTTGTGGCAGAAAAAGAAAACTGAACTTAAGCAATAG 246 0.439 MQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDESGIYNGTFSTFALCGFTRAQGDADSGIDRLWQKKKTELKQ* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0979 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 - -
Tpr3g0979 81 PIRSF RPS21e 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Tpr3g0979 81 Pfam Ribosomal protein S21e 1 76 IPR001931 GO:0003735|GO:0005840|GO:0006412
Tpr3g0979 81 Gene3D - 1 80 IPR038579 -
Tpr3g0979 81 PANTHER 40S RIBOSOMAL PROTEIN S21 1 81 IPR001931 GO:0003735|GO:0005840|GO:0006412
Tpr3g0979 81 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0979 Tpr-Chr3 8943085 8944493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0979 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 83.951 4.06e-51 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0979 K02971 - gmx:100817753 154.451