Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0970 ATGAATATGCATAATCACACCGAAATTATACAACAAACAAATAATACAAATATTCCCCTTCACAACCTTAACGAACTAAGCACCAAAATGGATTCTATTCAACGCTACATATCCCAATCCATCAACACCAACACTCTCCTCCCCAAACATCACTTAGACACACTCTCCGACCAAATCTCAACAACCATTCGCCAAGTCATTATCAACGCAACTGCTCTTCTCGCCACATATCCTGCAACAACAATGGTTAAACCAACCACGTGTTACAAGACATATGACGAGAATGATGCACTACTCACTACATGTCCTGCAACAATAACGGATCCACCAACTAATTGTTACAGGATACGTGGTGAGAACAACAGTTGCATTAATGATGCCGTGGCGAATTCCACGATAGATTCTGATGTCGTGGAACTCGATGCAGTGGAACTTCTTGCGAATCACTTTCACTTCTGCGAAATTTGCGGGAAAGGTTTCACGCGCAACGCAAATTTGCGTATGCACATGCGCGCGCACGGAGACAAATTTAAAACACCCGAATCTTTACGTTGCGGGAGGGAAACGCGCTTATCGGCAACGCGATTTTCTTGTCCTTTCGAAAGTTGCAAACGGAACAGGTTACACAAGAAGTTCACGCCGTTAAAATCAGTGTTATGTTTGAGAAACCATTTCAAGAGAAGTCATTGTCCGAAAACTCACACGTGCGATCGGTGTCGGAAGAAGAGTTTTGCGTTGGTTTCGGATTTGAAGAGTCACGTGAAACAGTGTAAGGGAGAGTCCACGTGGAAGTGTTCGTGTGGTACCACGTTTTCTAGGAAGGAGAAATTGTTTGGACACATGGAACGGTTTGAGGGACATTCGCCGGCAGTGGTTGAGGTCGGTGATGAATCAATGGCGGCGGGAGAATGTGTGGGTGAAATGTTAACTAAGGAAACTGATTGTTTAGATGGGTTACCTGATGGTTTCTTTGATGATTTGGACAAATTTTGGGTCTGA 999 0.4394 MNMHNHTEIIQQTNNTNIPLHNLNELSTKMDSIQRYISQSINTNTLLPKHHLDTLSDQISTTIRQVIINATALLATYPATTMVKPTTCYKTYDENDALLTTCPATITDPPTNCYRIRGENNSCINDAVANSTIDSDVVELDAVELLANHFHFCEICGKGFTRNANLRMHMRAHGDKFKTPESLRCGRETRLSATRFSCPFESCKRNRLHKKFTPLKSVLCLRNHFKRSHCPKTHTCDRCRKKSFALVSDLKSHVKQCKGESTWKCSCGTTFSRKEKLFGHMERFEGHSPAVVEVGDESMAAGECVGEMLTKETDCLDGLPDGFFDDLDKFWV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0970 332 Gene3D Classic Zinc Finger 151 176 - -
Tpr3g0970 332 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 9 300 - -
Tpr3g0970 332 SMART c2h2final6 151 173 IPR013087 -
Tpr3g0970 332 SMART c2h2final6 196 229 IPR013087 -
Tpr3g0970 332 SMART c2h2final6 234 255 IPR013087 -
Tpr3g0970 332 SMART c2h2final6 263 287 IPR013087 -
Tpr3g0970 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 178 IPR013087 -
Tpr3g0970 332 SUPERFAMILY beta-beta-alpha zinc fingers 149 176 IPR036236 -
Tpr3g0970 332 Gene3D Classic Zinc Finger 230 303 - -
Tpr3g0970 332 Pfam Zinc-finger of C2H2 type 152 171 - -
Tpr3g0970 332 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 9 300 IPR044300 GO:0010044|GO:0010447
Tpr3g0970 332 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0970 Tpr-Chr3 8888670 8889985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0970 136 291 C2H2 Transcription Factor Family AT1G34370 54.321 4.80e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr3g0970 zf-met 0.0013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0970 - - pvu:PHAVU_002G256900g 335.88