Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0946 ATGTCAACAGCTATAAATATATACAATAGCAACAAAAACATTACACATGGTTTCTTAGATCCATATAATGAAGAACTTATGAAAGCACTTGAGCCTTTTATCAAAAGTGATTCTTCATTAATCTCTTCTTCCACACATCAACAATCACACTTTCCCTCAACTTCTTATTCACCATTTTCACCCAATTACTTCACCTACGAAACCCAAACAAGCTCAATTGGACTTAACCAACTCACCCCATCACAAATCCTTCAAATTCAAACCCAAATTCAAATTCCCCAAAAAAGCCATCTTTCTCAAAAGCCCGTTTCCATGAAGCACTTTTCAACTCCTTCAAAACCGATGAAACTCTACCGTGGAGTTAGACAACGTCATTGGGGAAAATGGGTTGCTGAAATAAGACTCCCAAAAAACCGTACTCGTCTCTGGTTAGGTACATTTGAAACTGCAGAGGAAGCAGCTTTTGCTTATGATAACGCAGCTTATAAGCTTAGAGGTGAATTTGCACGACTCAATTTTCCTCACATGAGTCACCATGAAAATTACAATCCTCTCCCTTCTTCCGTTGATTCAAAGCTTCAAGCTATTTGTGAAACTTTAGCCATTTCTCAAAAACAGGGGAAACAGGGGAACAATGAAAAACCCTGTTCCTCTGTTGTTGAAGATGTAAAACCGGTTGTTTGTATTCCTACAAAACCGAAGGATGAATTGGTTTGTCACAAGTTTGAGGATTTTAAGGTTGAGAATGAGAAGACAATGATTTCATCTATGTCTGATGAATGTTCAACTTGTTTGTCATCTCCAGAATCTGGTATTACTTTCTTGGATTTCTCAGATTCTAGCCATTGGGATGAAGTGGAGAATTTTGGGTTGAAGAAGTACCCTTCTGTTGAAATTGATTGGGAAGCTTTATGA 915 0.377 MSTAINIYNSNKNITHGFLDPYNEELMKALEPFIKSDSSLISSSTHQQSHFPSTSYSPFSPNYFTYETQTSSIGLNQLTPSQILQIQTQIQIPQKSHLSQKPVSMKHFSTPSKPMKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFETAEEAAFAYDNAAYKLRGEFARLNFPHMSHHENYNPLPSSVDSKLQAICETLAISQKQGKQGNNEKPCSSVVEDVKPVVCIPTKPKDELVCHKFEDFKVENEKTMISSMSDECSTCLSSPESGITFLDFSDSSHWDEVENFGLKKYPSVEIDWEAL* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0946 304 CDD AP2 116 175 IPR001471 GO:0003700|GO:0006355
Tpr3g0946 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 304 - -
Tpr3g0946 304 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 304 - -
Tpr3g0946 304 ProSiteProfiles AP2/ERF domain profile. 117 174 IPR001471 GO:0003700|GO:0006355
Tpr3g0946 304 SUPERFAMILY DNA-binding domain 117 175 IPR016177 GO:0003677
Tpr3g0946 304 SMART rav1_2 117 180 IPR001471 GO:0003700|GO:0006355
Tpr3g0946 304 Gene3D AP2/ERF domain 117 176 IPR036955 GO:0003700|GO:0006355
Tpr3g0946 304 PRINTS Ethylene responsive element binding protein signature 118 129 IPR001471 GO:0003700|GO:0006355
Tpr3g0946 304 PRINTS Ethylene responsive element binding protein signature 140 156 IPR001471 GO:0003700|GO:0006355
Tpr3g0946 304 Pfam AP2 domain 118 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0946 Tpr-Chr3 8731025 8732603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0946 4 304 AP2-EREBP Transcription Factor Family AT4G39780 49.679 1.55e-82 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr3g0946 AP2 5.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr3g0946 K09286 - gmx:100818839 293.893