Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr3g0898 ATGACAAACGCTTTCTCTATAGTAACACAACAATACAAAGCGTTACTAAAAAAAAACATATTACTCTCATGGCGAAGTAAGCGATCAATTCTTCTCCAATTATTCTCACCAATTATCTTCATCTTCTTAATATTCGCCATTGACAAAGCAATTAAAGCACAAACTTCAACAACTTCAGCATACAAAACAGTTAAAAACCCTAAATTACAACCTTCACCATCAATTCCACCTTGTGAAAACAAATTCTTCATCAAAAAACCTTGTTATGATTTCGTATGGAGTGGTGATAAGAATCCGAAGTTTCATACAATTGTTGATCGAATAATTAGGAATAATCCTGGTAGGGTTATACCTAATTGGAAAGTTAAATCGTTTGGTGATAAATATGAAGTTGATGAATGGTTATTGAATAATCCTATGCAATGTCCTGGTGCGATTCATTTTGGTGAAAAGAATGATAGTGTTATTAGTTATGGGATTCAGACTAATTCTACAACTCTTCAGAAACGTGGAAGGTATGAAGATCCTACTTTTTCTTTTCAACTTCCTCTTCAGCTTGCTGCTGAACGTGAAATCGCCAGATTCCTTATTGGAGATCCAAGCTTCAAGTGGAATGTGTTTTTGAAGGAATTCCCACACCCATCCATGACTCCTTTCTCTGCTGTTAAAACAATTGGTCCATCATTTTTTCTTGCAATTGCTATGTTTAATTTTGTTCTTCAGATGAGTTCTTTGGTGACAGAGAAAGAGCTTAAACTTCGCCAGGCAATGACAGTGATGGGGCTTTACGACTCTGCATACTGGTTATCATGGCTAACCTGGGAAACAGTTGTTGCACTCATATCATCTATTCTCATAGTTCTCTCTGGCATGATGTTTCAGTTCAGTTTCTTCTTGAAAAATAGTTTCGCTGTTCTGTTCGTTTTGTTCTTCCTATTTGAACTCAACATGACTGGATTGGCCTTCATGTTATCGGCTTTCATTCGTAAATCAGCTTCGGCAACAACAATCGGCTTCTTCATATTTATTATCGGCTTTGTGACACAGATTGTCGTACGAGCCGGATTTCCTTACACGGATGGCATCTCTGATACTTACCGAAATTTATGGTCATTGTTTCCGCCTAATCCTTTTGCTCAAGCCTTGAAAGTGCTTTCAAATGCTGTTTCAACCCCTGAAGGTGATGGTGTTAGCTGGAGTAAACGGGGGGTATCATGCGACACTTTCGACACTAACTGTGGGATGTCAATTAATACTATTTATAAATGGCTTCTTGCCACATTCTTTTTGTGGTTTGTTCTGGCCATCTACTTTGACAATATAATCCCAAATGCAATGGGTGTGAGGAAATCTGTGTTATACTTTCTAAATCCTCATTATTGGACAGGAAAAGGAGGACAAAAAGTGAAAGAGGGTGGGGTTTGTAGTTGCTTAACTTCAGCCCATCATGAAGAAAATAGAACAGCAGATGATGAAGATGTCCTTGAAGAAGAAAATGCTGTTAGACAGCAACTAACACAAGATGTGGTTGACGCAAATGTTGCTGTTCAGGTACATGGCATTGTGAAGACTTATCCCGGTACATTCAGCATTGGTTGCTGCTGTAAATGTAAAAGAACTGCTCCTTACCATGCTCTTAAGGGGTTGTGGGTGAAGTTTACAAAGGATCAGTTATTTTGTCTTTTAGGACCTAATGGAGCTGGAAAAACTACTGTTATTAATTGTTTGACAGGGATAACTCCAGTAACTGGTGGAGATGCATTGATTTATGGGCATTCAATACGAAGCTCCACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTGTGTCCCCAGTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTCGAACTCTTCGCTAGTATTAAAGGCATATCCCCAGCTTCTATAAAATCGATTACTCAAACATCATTGGCAGAGGTGAAACTCGTGGATGCAGCTAAAGTAAGATCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTTAGTGTTGCAATTGCTCTTATTGGTGACCCTAAATTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACAAGGAGGCATGTGTGGGACATAATTGAAAATGCAAAAAAAGGGCGTGCCATTATTCTCACAACACATTCTATGGAAGAAGCTGACATTCTAAGTGACCGAATAGGAATCATGGCAAAGGGAAGACTCCGCTGCATTGGCACCTCAATCAGATTGAAGTCACGCTTCGGTACTGGTTTTATTGCTAATATTAGCTTCCATGGAAACAATAATGAACATAGTCCTGCAAATAGTGATGCAATATCAGCAAGACATCGTGAGGCTGTGAAGGAATTCTTTAAGCATCGTCTAGATGTAGTACCAAAAGAGGAGAACAATAACTTTCTAACTTATGTGATTCCTCATGAAAGAGAGGCACTCCTTACAAATTTTTTTGAGGAGCTGCAAGACAGAGAAGAAGAGTTTGGCATATCTGACATCCAGCTTGGTCTAACAACTCTTGAAGAAGTTTTCTTGAATATTGCAAGGCAAGCAGAGCTAGAAAGTGCTACAGCTGAAGGGAGCTTAGTGACTTTGACCTTGACATCTGGAGAGTCTGCGGAGATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAATATCCCACAGGTTTTATGGTAGAAGTATACTGGGAACAAGATGATACTGGTTCCCTTTGTGTCGCTGGCCACTCGCAGAAAGCTCCAATTCCTCAAAATATCCAACTATCATCATCTGCTACTACAAGACAACGCCGGTCAGCGTCAGTTCGCGGGGTTGTGATTGATCCAAGCCAAGTTACTTCTGTCAATTTTCAGTGA 2886 0.3981 MTNAFSIVTQQYKALLKKNILLSWRSKRSILLQLFSPIIFIFLIFAIDKAIKAQTSTTSAYKTVKNPKLQPSPSIPPCENKFFIKKPCYDFVWSGDKNPKFHTIVDRIIRNNPGRVIPNWKVKSFGDKYEVDEWLLNNPMQCPGAIHFGEKNDSVISYGIQTNSTTLQKRGRYEDPTFSFQLPLQLAAEREIARFLIGDPSFKWNVFLKEFPHPSMTPFSAVKTIGPSFFLAIAMFNFVLQMSSLVTEKELKLRQAMTVMGLYDSAYWLSWLTWETVVALISSILIVLSGMMFQFSFFLKNSFAVLFVLFFLFELNMTGLAFMLSAFIRKSASATTIGFFIFIIGFVTQIVVRAGFPYTDGISDTYRNLWSLFPPNPFAQALKVLSNAVSTPEGDGVSWSKRGVSCDTFDTNCGMSINTIYKWLLATFFLWFVLAIYFDNIIPNAMGVRKSVLYFLNPHYWTGKGGQKVKEGGVCSCLTSAHHEENRTADDEDVLEEENAVRQQLTQDVVDANVAVQVHGIVKTYPGTFSIGCCCKCKRTAPYHALKGLWVKFTKDQLFCLLGPNGAGKTTVINCLTGITPVTGGDALIYGHSIRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLELFASIKGISPASIKSITQTSLAEVKLVDAAKVRSGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKKGRAIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFHGNNNEHSPANSDAISARHREAVKEFFKHRLDVVPKEENNNFLTYVIPHEREALLTNFFEELQDREEEFGISDIQLGLTTLEEVFLNIARQAELESATAEGSLVTLTLTSGESAEIPIGARFVGIPGTESAEYPTGFMVEVYWEQDDTGSLCVAGHSQKAPIPQNIQLSSSATTRQRRSASVRGVVIDPSQVTSVNFQ* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr3g0898 961 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 6 933 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tpr3g0898 961 ProSitePatterns ABC transporters family signature. 664 678 IPR017871 GO:0005524
Tpr3g0898 961 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 516 762 IPR003439 GO:0005524
Tpr3g0898 961 Pfam ABC transporter 546 691 IPR003439 GO:0005524
Tpr3g0898 961 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 6 933 - -
Tpr3g0898 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 744 IPR027417 -
Tpr3g0898 961 SMART AAA_5 555 739 IPR003593 -
Tpr3g0898 961 Pfam ABC-2 family transporter protein 27 437 - -
Tpr3g0898 961 Gene3D - 503 787 IPR027417 -
Tpr3g0898 961 CDD ABC_subfamily_A 516 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr3g0898 Tpr-Chr3 8385420 8393103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr3g0898 559 781 Calmodulin-binding Proteins AT2G36910 24.675 1.71e-10 63.5